Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_F19
(935 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 32 0.75
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 31 1.7
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.7
01_03_0005 + 11568545-11569119,11569179-11569191 31 1.7
01_06_1377 + 36764461-36765339 29 4.0
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 7.0
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 9.3
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 31.9 bits (69), Expect = 0.75
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 585 PXPPPXXXKXPPPPXKKXGCFXKKNXXFXPPP 680
P PPP K PPPP K K+ PPP
Sbjct: 58 PPPPPQPAKEPPPPTKPKHPKPKQQQHPPPPP 89
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 586 PXPPXXXXKXPPPPXKKXXVXKKKXPXFXPPPXKXKKXG 702
P PP K PPPP K K+ PPP + G
Sbjct: 58 PPPPPQPAKEPPPPTKPKHPKPKQQQHPPPPPPQKPPQG 96
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 586 PXPPXXXXKXPPPPXKKXXVXKKKXPXFXPPP 681
P PP PPPP K K P PPP
Sbjct: 350 PPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPP 381
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 585 PXPPPXXXKXPPPPXKKXGCFXKKNXXFXPPP 680
P PPP PPPP K K PPP
Sbjct: 350 PPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPP 381
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/68 (26%), Positives = 18/68 (26%)
Frame = +1
Query: 586 PXPPXXXXKXPPPPXKKXXVXKKKXPXFXPPPXKXKKXGXXXXXXXXXXXXXXXXGXXFX 765
P PP PPPP P PPP K G
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375
Query: 766 XXPPPPXK 789
PPPP K
Sbjct: 376 GPPPPPPK 383
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 772 PPPPXKKXGVXFGPXXKXXXGXXXPPPQKXKXXXXXKKXXXXXPPP 909
PPPP K P PPP K K PPP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = +3
Query: 585 PXPPPXXXKXPPPPXK-KXGCFXKKNXXFXPPPXXXKKXGG 704
P PPP PPPP K K PPP K GG
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGG 376
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 680 GGGXKXGIFFXKTXXFFXGGGGXFXXXXGGXGLIKTXPPP 561
GGG GI++ GGGG + GG G T PPP
Sbjct: 107 GGG---GIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPP 143
>01_06_1377 + 36764461-36765339
Length = 292
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 576 FY*PXPPPXXXKXPPPPXKKXGCFXKKNXXFXPPP 680
+Y P PPP PPPP + + + PP
Sbjct: 170 YYFPPPPPPAYSAPPPPQYGSEQYYRSGGYYSAPP 204
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +1
Query: 586 PXPPXXXXKXPPPPXKKXXVXKKKXPXFXPPP 681
P PP PPPP V + P PPP
Sbjct: 82 PPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPP 113
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +1
Query: 586 PXPPXXXXKXPPPPXKKXXVXKKKXPXFXPPP 681
P PP PPPP + P PPP
Sbjct: 425 PPPPPLPPPPPPPPPPPPPLPPNMPPPLPPPP 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,108,700
Number of Sequences: 37544
Number of extensions: 507411
Number of successful extensions: 2103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1681
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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