Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F18
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    29   0.86 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   6.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   8.0  

>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 52  VARGRPNRQHASPSDAPITSIAVTLQTSTNRRRLYYNDD--HFRY*LVDSRSLSSLQRYR 225
           VAR  PN+     S    + I   L+  ++  R Y  +D   F   LVD+   S LQ ++
Sbjct: 176 VARAYPNKGTKRASAFKPSGIQSMLKVISSHFRPYRQEDAHEFMRYLVDAWQKSCLQNHK 235

Query: 226 DDRLVSRYTSILSAVF 273
           +    SR TS++  +F
Sbjct: 236 NLDHPSRETSVVHRIF 251


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 199  SLSSLQRYRDDRLVSRYTSILSAVFTSTPFTTTNKVFFDSSRH*CCRCECAP 354
            SL  +Q     R V  +T +L  V   TPF     V F        R EC P
Sbjct: 1093 SLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRKECPP 1144


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/46 (23%), Positives = 18/46 (39%)
 Frame = -2

Query: 657 KKFPXXMIXFRGQSTPPQXLHRFRVVFSQTQPVIRXPAHNNTMPYL 520
           ++ P  M+           L R   + S  QP+ + P  N   PY+
Sbjct: 117 RQLPPNMVAATNAPQQHPQLQRMMPILSSNQPIQQLPLPNQASPYI 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,076
Number of Sequences: 5004
Number of extensions: 54120
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)