Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F18
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109...    31   1.6  
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678...    31   1.6  
03_05_0627 - 26240673-26241318,26241713-26242536                       29   4.8  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    29   6.4  

>07_01_0154 -
           1094256-1094672,1094954-1094977,1095867-1095891,
           1096014-1096304,1096391-1096470,1096953-1097052,
           1097143-1097204,1097650-1097750,1097940-1098117,
           1098298-1098924,1099014-1099100,1099804-1099905,
           1100265-1100348,1100580-1100657
          Length = 751

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 453 HRICCKYTXRSDVTPHCANVFLNFTCRVSQCYTGRAFTTAALMSTTIEENFIRRSK 286
           H +   Y    DV  HCA   L     V+QC+   +FT  ++    IE+   +R K
Sbjct: 478 HLVLVDYLISKDVGVHCAQYLLRCLRLVTQCW--HSFTDDSIYEAKIEKLNFKRQK 531


>05_05_0199 -
           23165776-23166259,23166356-23167128,23167633-23167869,
           23167973-23168197
          Length = 572

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
 Frame = -1

Query: 265 LTG*TYNGSQGDRLC-TVAGMKASASPRASTESDRHYNTAGGGSYSSGV*QRST*SVRQT 89
           L G  YNG Q          M A   P   T S    + AG GSYS      +    RQ 
Sbjct: 154 LGGDPYNGEQQQPWSYQEPTMDADTRPAEFTSSAAAGDVAGNGSYSQVAAPAAAGGFRQQ 213

Query: 88  AKRVADSGALERLKXLKEFPSSE 20
           ++R +D G   R    K+   SE
Sbjct: 214 SRRSSDDGYNWRKYGQKQMKGSE 236


>03_05_0627 - 26240673-26241318,26241713-26242536
          Length = 489

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 426 RSDVTP-HCANVFLNFTCRVSQCYTGRAFTTAALMSTTIEENFI 298
           R+D+ P   A  FLNF+C     Y  R  TT    +TT   + I
Sbjct: 68  RADLLPLSLAGFFLNFSCHDYSEYFSRPTTTTTTTTTTCHRHLI 111


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 652 IPGQXDXXPGTIHPTPXFAPVPGSFQP-DPAS 560
           +PG  +  P T+ P P   P+P S +P DP++
Sbjct: 192 MPGTEEAGPSTLPPPPPPPPLPASSEPVDPSA 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,644,399
Number of Sequences: 37544
Number of extensions: 419447
Number of successful extensions: 966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)