Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F18
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-6|AAF36074.1|  167|Caenorhabditis elegans Human jtb gen...    29   5.7  
AB016495-1|BAA34305.1|  133|Caenorhabditis elegans cJTB-like pro...    29   5.7  
Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical pr...    28   10.0 
AF025451-2|AAK68202.1|  612|Caenorhabditis elegans Hypothetical ...    28   10.0 
AF025451-1|AAB71201.1|  610|Caenorhabditis elegans Hypothetical ...    28   10.0 

>AC024214-6|AAF36074.1|  167|Caenorhabditis elegans Human jtb gene
           related protein 1 protein.
          Length = 167

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 542 ITTPCHTCMPFVIVCLRXMTCLLHTYFSKVTEFAASTHXVRTSP 411
           + T C  C  F I  ++   CL   YF +V    +ST  +R  P
Sbjct: 77  VVTQCAPCKDFEIKAIKAGHCLKTGYFDRVNCSKSSTTVLRPCP 120


>AB016495-1|BAA34305.1|  133|Caenorhabditis elegans cJTB-like
           protein.
          Length = 133

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 542 ITTPCHTCMPFVIVCLRXMTCLLHTYFSKVTEFAASTHXVRTSP 411
           + T C  C  F I  ++   CL   YF +V    +ST  +R  P
Sbjct: 43  VVTQCAPCKDFEIKAIKAGHCLKTGYFDRVNCSKSSTTVLRPCP 86


>Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical
           protein F14E5.6 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 450 CDFGKIRVEQACHXTKADNHKXHTGMAWCC 539
           CD  +  +E+AC   +ADNH+  + + + C
Sbjct: 213 CDIFESAMEKACPNLEADNHRDESAIMYEC 242


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -1

Query: 220 TVAGMKASASPRASTESDRHYNTAGGGSYSSGV*QRST*SVRQTAKRVADSG 65
           T +G   S +P AST S    +T  G S SSG    S  +V  T+     SG
Sbjct: 531 TTSGSTVSTTPGASTTSGSTQSTTSGPSTSSGPSTASRSTVSTTSGPSTTSG 582


>U50069-4|AAB37557.1|  355|Caenorhabditis elegans Hypothetical
           protein C09B9.1 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 561 VIRXPAHNNTMPYLYAXCDCLPSXNDMPAP 472
           +I  P +   +P L+  C C P  N  P P
Sbjct: 311 MIFLPPYRRAVPLLFCCCSCCPKVNVEPLP 340


>AF025451-2|AAK68202.1|  612|Caenorhabditis elegans Hypothetical
           protein C24H12.5b protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
 Frame = -2

Query: 585 VVFSQTQPVIRXPAHN-NTMPYLYAXCDCLPSXNDMPAPHVFFQSHRICCKYTXRSD--- 418
           VV  +T P  + P     T P+LY     L   ++     +F ++   C +Y  + +   
Sbjct: 494 VVHEKTGPYTKIPPTLIATSPFLYGQLLSLTKSSN-----IFAKAGTKCTEYELKLENGP 548

Query: 417 VTPHCANVFLNFTCRVSQCYTGRAFTTAALM 325
           V PHCA +   F    + C T     T  +M
Sbjct: 549 VLPHCAKMMTQFIRSTNMCSTEEKPVTMQVM 579


>AF025451-1|AAB71201.1|  610|Caenorhabditis elegans Hypothetical
           protein C24H12.5a protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
 Frame = -2

Query: 585 VVFSQTQPVIRXPAHN-NTMPYLYAXCDCLPSXNDMPAPHVFFQSHRICCKYTXRSD--- 418
           VV  +T P  + P     T P+LY     L   ++     +F ++   C +Y  + +   
Sbjct: 492 VVHEKTGPYTKIPPTLIATSPFLYGQLLSLTKSSN-----IFAKAGTKCTEYELKLENGP 546

Query: 417 VTPHCANVFLNFTCRVSQCYTGRAFTTAALM 325
           V PHCA +   F    + C T     T  +M
Sbjct: 547 VLPHCAKMMTQFIRSTNMCSTEEKPVTMQVM 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,556,112
Number of Sequences: 27780
Number of extensions: 338146
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)