Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F17
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    28   1.6  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   2.8  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         26   8.6  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   8.6  

>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 489 FVAPYHSDEYHEVLRHESDLPPSISRQPLTSSQEYLELQKRESD 620
           F+ PY  D Y  V+  + ++  +++   + S++ ++E  K  SD
Sbjct: 259 FIVPYTEDTYILVVIADPEIESAVTLMNIQSARRFIEASKSASD 302


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 204 EPIDLFTGNGTYKSI--NPIISKVGDFTPFYIAIAISSVILGFLLILNIVCCCSRYSDYW 377
           EP     G   Y+S+  N +I +VGD     +    SS  LG +        C  Y    
Sbjct: 43  EPFQKEAGRSYYRSLKKNDVIYRVGD--DITVHDGDSSFYLGVI--------CKLYEKA- 91

Query: 378 LDRHTGNRWIVSIW 419
           +D+H+G +++ +IW
Sbjct: 92  IDKHSGKKYVEAIW 105


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 306 SSVILGFLLILNIVCCCSRYSDYW 377
           S+V L F  I+ +VC  S YS +W
Sbjct: 462 SAVCLRFYFIILVVCIASLYSAFW 485


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 777 SKLISSIHLVSICGVPNLHH 718
           S L SS+H +SIC   +LHH
Sbjct: 11  SSLKSSLHGLSICAFNHLHH 30


>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 210 IDLFTGNGTYKSINPIISKVG 272
           +D+  GNG Y+ +NP +  +G
Sbjct: 46  VDIGCGNGKYQKVNPNVYMIG 66


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 405 SSDFLCVYRANSQSIGSNSKQCLKSGENPK 316
           SSDF C +R +   I   S  C  S +NP+
Sbjct: 326 SSDFTCPFRQSDGIIKGKSFVCRGSVDNPR 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,975
Number of Sequences: 5004
Number of extensions: 67038
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)