Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F17
         (921 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB117974-1|BAD21206.1|  427|Homo sapiens brain epsilon-sarcoglyc...    32   2.5  
U52840-1|AAC09473.1| 1074|Homo sapiens semaphorin F homolog prot...    32   3.4  
BC115696-1|AAI15697.1| 1074|Homo sapiens sema domain, seven thro...    32   3.4  

>AB117974-1|BAD21206.1|  427|Homo sapiens brain epsilon-sarcoglycan
           protein.
          Length = 427

 Score = 32.3 bits (70), Expect = 2.5
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +3

Query: 231 GTYKSINPIISKVGDFTPFYIAIAI-SSVILGFLLILNIVCCCSRYSDYWLDRHTG-NRW 404
           G YK  +  +     +T F I +A+ S+V L   LIL  + CC R     L  H+   + 
Sbjct: 275 GEYKPPSDSLKSRDYYTDFLITLAVPSAVALVLFLILAYIMCCRREGVIQLVHHSAIQKS 334

Query: 405 IVSIWSTTPHKQPPLDLTELNI-EKLPIQFVAPYHSDEY 518
              +   + +++    L+ L +   +  + + P H+D Y
Sbjct: 335 TKELRDMSKNREIAWPLSTLPVFHPVTGEIIPPLHTDNY 373


>U52840-1|AAC09473.1| 1074|Homo sapiens semaphorin F homolog protein.
          Length = 1074

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 264  KVGDFTPFY-IAIAISSVILGFLLILNIVCCCSRY 365
            + G+F  F+ IA+ +SS ILG LL L +   C RY
Sbjct: 962  RCGEFNMFHMIAVGLSSSILGCLLTLLVYTYCQRY 996


>BC115696-1|AAI15697.1| 1074|Homo sapiens sema domain, seven
            thrombospondin repeats (type 1 and type 1-like),
            transmembra protein.
          Length = 1074

 Score = 31.9 bits (69), Expect = 3.4
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 264  KVGDFTPFY-IAIAISSVILGFLLILNIVCCCSRY 365
            + G+F  F+ IA+ +SS ILG LL L +   C RY
Sbjct: 962  RCGEFNMFHMIAVGLSSSILGCLLTLLVYTYCQRY 996


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,907,266
Number of Sequences: 237096
Number of extensions: 2231804
Number of successful extensions: 3770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3770
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)