Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F17
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   5.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   9.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   9.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   9.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   9.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   9.0  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -2

Query: 473 FNV*LSQVKRRLFMRGCRPDGNNPAIS-CVSIEPIV 369
           FN    +  +R+  +G R  GN P+ S C     +V
Sbjct: 328 FNTEFREAFKRILTKGARARGNQPSTSECGEFRSVV 363


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 646 ISCCSSAFNVCFDGYYINFKIWSSVVQ-IRHTTYADQM 756
           I C    FNV  +    N KI S +V+ + +   ADQ+
Sbjct: 63  IECTMKKFNVVDENANFNEKISSDIVRAVLNDNEADQL 100


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 228 NGTYKSINPIISKVGDFTP 284
           NG   S+N I  KVGD  P
Sbjct: 84  NGVPSSLNVISKKVGDGGP 102


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -2

Query: 317 NNGTYSYRYVKRCK 276
           NN  Y Y Y   CK
Sbjct: 92  NNNNYKYNYNNNCK 105


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 441 AVYEGL*TRWKQSSDFLCVYRA 376
           A+YE L  RW  ++D+  V+R+
Sbjct: 103 AIYEVLENRWLFTTDWCDVWRS 124


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 228 NGTYKSINPIISKVGDFTP 284
           NG   S+N I  KVGD  P
Sbjct: 84  NGVPSSLNVISKKVGDGGP 102


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 228 NGTYKSINPIISKVGDFTP 284
           NG   S+N I  KVGD  P
Sbjct: 84  NGVPSSLNVISKKVGDGGP 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,486
Number of Sequences: 438
Number of extensions: 4842
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)