Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F14
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   3.7  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   4.9  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    26   6.5  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   6.5  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    26   6.5  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 779  LQNLVGDEAKEKSPVKETDDE 841
            L+N + D AKEK P+  +DDE
Sbjct: 1094 LKNQIDDLAKEKLPLSSSDDE 1114


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 388 ICGGSGERGFGSLTVPPEDLALF-CMKSLSDSLPWFRYVDDFIFYIF 251
           +C  S     G  T  P  L +F C +  SDSL  F ++ + + YIF
Sbjct: 459 LCNSSHSPLLGFFTTLPGILRVFQCFRRYSDSLKSFPHLVNALKYIF 505


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 393 NDEEYCGDYDQFDLANEVDTLEQFLKL 473
           N E     YD +D  ++VD+LE+ LKL
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 288 QGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEE 404
           QG  +  +  +N+ +    TVS  +P   LPP   N+ E
Sbjct: 443 QGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPE 481


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 285 NQGRESDKDFMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEY 407
           +QG  S     Q+ A  S           PLPPQ FN  +Y
Sbjct: 375 DQGSGSQLLGQQSFANDSLNAKQSSGKLGPLPPQSFNSSDY 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,795
Number of Sequences: 5004
Number of extensions: 41435
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)