Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F14
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-1|CAB60842.2|  132|Caenorhabditis elegans Hypothetical ...    50   2e-06
Z82264-6|CAB05157.1|  214|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical ...    29   4.6  
AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical ...    29   4.6  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       29   6.1  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    29   6.1  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    29   6.1  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    29   6.1  

>AL132876-1|CAB60842.2|  132|Caenorhabditis elegans Hypothetical
           protein Y105E8A.1 protein.
          Length = 132

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 25/54 (46%), Positives = 34/54 (62%)
 Frame = +3

Query: 312 FMQNNAKSSGGTVSDPNPRSPLPPQMFNDEEYCGDYDQFDLANEVDTLEQFLKL 473
           FM+ NA   G     PN  + LPPQ F ++EY GDY+ FD + E DT+ +FL+L
Sbjct: 51  FMRENASKKG-----PNG-AVLPPQFFYEDEYLGDYEDFDTSVEADTITEFLRL 98



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +2

Query: 170 VKIYISGISGNKEVKKRQQRVLMILDSKNIKYEVIDITEPGXRVR*RF 313
           +K+Y++  + N E K R QR LMILD   I ++ IDIT+P    + RF
Sbjct: 4   LKVYVASATANPETKYRVQRTLMILDGLGIPFDSIDITKPEHAEQRRF 51


>Z82264-6|CAB05157.1|  214|Caenorhabditis elegans Hypothetical
           protein C49C3.12 protein.
          Length = 214

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 179 YISGISGNKEVKKRQQRVLMILDSKNIK 262
           ++SGI  N E +  +++ L ILD KNIK
Sbjct: 56  HLSGIESNSEKRYVEEQTLSILDDKNIK 83


>AF125955-4|AAO12428.1|  181|Caenorhabditis elegans Hypothetical
           protein F46E10.10c protein.
          Length = 181

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 160 KHGCQNLYQWHFWQQGGEETSAAGPDD 240
           K  C +++ WHF  + G+  S A P D
Sbjct: 94  KAACDHIHDWHFGTKAGQFVSMAVPSD 120


>AF125955-3|AAD14720.1|  336|Caenorhabditis elegans Hypothetical
           protein F46E10.10a protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 160 KHGCQNLYQWHFWQQGGEETSAAGPDD 240
           K  C +++ WHF  + G+  S A P D
Sbjct: 249 KAACDHIHDWHFGTKAGQFVSMAVPSD 275


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 749  RSPEKEASPDLQNLVGDEAKEKSPVKETDDE 841
            ++PEK A+ +L++    E    SP K+T DE
Sbjct: 1813 KTPEKSAAEELKSPTKKEKSPSSPTKKTGDE 1843


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 749  RSPEKEASPDLQNLVGDEAKEKSPVKETDDE 841
            ++PEK A+ +L++    E    SP K+T DE
Sbjct: 1813 KTPEKSAAEELKSPTKKEKSPSSPTKKTGDE 1843


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 749  RSPEKEASPDLQNLVGDEAKEKSPVKETDDE 841
            ++PEK A+ +L++    E    SP K+T DE
Sbjct: 1813 KTPEKSAAEELKSPTKKEKSPSSPTKKTGDE 1843


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 749  RSPEKEASPDLQNLVGDEAKEKSPVKETDDE 841
            ++PEK A+ +L++    E    SP K+T DE
Sbjct: 1813 KTPEKSAAEELKSPTKKEKSPSSPTKKTGDE 1843


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,775,315
Number of Sequences: 27780
Number of extensions: 233916
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)