Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_F11
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 123 3e-29
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 91 2e-19
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 74 2e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 70 4e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 66 9e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 65 2e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 63 6e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 62 8e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 59 1e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 58 1e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 56 7e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 56 7e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 56 9e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 9e-09
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 54 4e-08
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 53 7e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 2e-06
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 46 6e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 1e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 44 2e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 44 4e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 5e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 33 0.056
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 1.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 1.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 1.6
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 123 bits (297), Expect = 3e-29
Identities = 60/91 (65%), Positives = 74/91 (81%)
Frame = +3
Query: 471 QKFTALEGTVCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP 650
+KF+ L+ + E IK+MGF TMTEIQ ++IPPLL GRD++GAAKTGSGKTLAFLIP
Sbjct: 89 EKFSDLQ--LSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIP 146
Query: 651 SIDLIYKLKFKPRNGTGVIILSPTREFQCNI 743
+I+++Y LKFKPRNGTGVII+SPTRE I
Sbjct: 147 TIEMLYALKFKPRNGTGVIIISPTRELALQI 177
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 91.5 bits (217), Expect = 2e-19
Identities = 39/75 (52%), Positives = 58/75 (77%)
Frame = +3
Query: 504 EPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFK 683
+PT +K+ F+T+TEIQ + IP L+GRD++GAAKTGSGKTLAF++P I+ +Y+ K+
Sbjct: 48 QPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWT 107
Query: 684 PRNGTGVIILSPTRE 728
+G G +++SPTRE
Sbjct: 108 SLDGLGALVISPTRE 122
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 74.1 bits (174), Expect = 2e-14
Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Frame = +3
Query: 507 PTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSID-LIYKLKFK 683
P L G+ ++GF T+IQ K IP L G+D+VGAA TGSGKT AF++P ++ L+Y+ K
Sbjct: 269 PILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKV 328
Query: 684 PRNGTGVIILSPTRE--FQCN 740
P T V+IL PTRE QC+
Sbjct: 329 PT--TRVLILCPTRELAMQCH 347
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 70.1 bits (164), Expect = 4e-13
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +3
Query: 510 TLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLK-FKP 686
T+ I +G+ T IQA+AIP + GRD++G AKTGSGKT+AFL+P I + K
Sbjct: 429 TISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKT 488
Query: 687 RNGTGVIILSPTREFQCNIGVLMDCDP 767
G II++PTRE + + +C P
Sbjct: 489 GEGPIAIIMTPTRELA--VQIFRECKP 513
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 65.7 bits (153), Expect = 9e-12
Identities = 40/87 (45%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Frame = +3
Query: 513 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRN 692
L I GF T IQ K IP LLEGRD+VG A+TGSGKT AF+IP I+ + +
Sbjct: 81 LRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE--HLKSTLANS 138
Query: 693 GTGVIILSPTREFQC-NIGVLMDCDPG 770
T +ILSP RE + V+ D G
Sbjct: 139 NTRALILSPNRELALQTVKVVKDFSKG 165
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 64.9 bits (151), Expect = 2e-11
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = +3
Query: 534 GFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGVIIL 713
GF MT +QA AIP L+ +DLV A TGSGKTLA+L+P D + + + G G +I+
Sbjct: 20 GFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTR-RDTDETGLGALIV 78
Query: 714 SPTREFQCNI 743
+PTRE I
Sbjct: 79 APTRELATQI 88
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 62.9 bits (146), Expect = 6e-11
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Frame = +3
Query: 537 FVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGV--II 710
F T +Q++ IP LEG+DLV A+TGSGKT A+LIP ++L+ K K N G+ ++
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALL 93
Query: 711 LSPTRE 728
L PTRE
Sbjct: 94 LVPTRE 99
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 62.5 bits (145), Expect = 8e-11
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +3
Query: 522 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSI-DLIYKLKFKPRNGT 698
+K +GF T IQ +A P + GRD+VG + TGSGKTL++ +P+I + + P +G
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGP 196
Query: 699 GVIILSPTREFQCNIGVLMDCDPGGHS 779
V++L+PTRE + + +C G S
Sbjct: 197 IVLVLAPTRELA--VQIQQECTKFGKS 221
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 58.8 bits (136), Expect = 1e-09
Identities = 32/72 (44%), Positives = 46/72 (63%)
Frame = +3
Query: 513 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRN 692
L+GI + GF + IQ ++IP L GRD++ AK G+GKT AF+IPS++ + K K +
Sbjct: 56 LMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQ- 114
Query: 693 GTGVIILSPTRE 728
+IL PTRE
Sbjct: 115 ---TLILVPTRE 123
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 58.4 bits (135), Expect = 1e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Frame = +3
Query: 522 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKL----KFKPR 689
+K + + + IQ AIP LL+ +DL+G A+TGSGKT AF+IP I I KL +
Sbjct: 264 LKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMH 323
Query: 690 NGTGVIILSPTREFQCNIGV 749
G ++L+PTRE I V
Sbjct: 324 LGPYAVVLAPTRELAQQIQV 343
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 56.0 bits (129), Expect = 7e-09
Identities = 32/71 (45%), Positives = 45/71 (63%)
Frame = +3
Query: 531 MGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGVII 710
+GF T T IQ +AIP +L RD++G A+TGSGKT AF +P +I +L P + ++
Sbjct: 64 LGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALP---VIQELWNNP-SPFFAVV 119
Query: 711 LSPTREFQCNI 743
L+PTRE I
Sbjct: 120 LAPTRELAYQI 130
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 56.0 bits (129), Expect = 7e-09
Identities = 33/80 (41%), Positives = 44/80 (55%)
Frame = +3
Query: 489 EGTVCEPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIY 668
EG +CE +K T IQ AIP + RDL+ A TGSGKT+A+L P ++
Sbjct: 54 EGILCE----NLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFP---ILQ 106
Query: 669 KLKFKPRNGTGVIILSPTRE 728
KL+ G II++PTRE
Sbjct: 107 KLQLHVPGGYRAIIVAPTRE 126
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 55.6 bits (128), Expect = 9e-09
Identities = 32/74 (43%), Positives = 43/74 (58%)
Frame = +3
Query: 522 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTG 701
+K + T+IQ I +LEGR+ +G AKTGSGKT AF +P +I K P +G
Sbjct: 22 LKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALP---IIEKWSKDP-SGIF 77
Query: 702 VIILSPTREFQCNI 743
+IL+PTRE I
Sbjct: 78 ALILTPTRELAIQI 91
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 55.6 bits (128), Expect = 9e-09
Identities = 30/60 (50%), Positives = 41/60 (68%)
Frame = +3
Query: 549 TEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGVIILSPTRE 728
T IQA P LL GRD+VG A+TGSGKT+AF IP++ + L ++ V+++SPTRE
Sbjct: 189 TPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS-DNKSVPRVLVVSPTRE 247
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 53.6 bits (123), Expect = 4e-08
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Frame = +3
Query: 513 LLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYK------- 671
L IK G+ T +Q +IP + GRDL+ A+TGSGKT FL P + L +
Sbjct: 181 LQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVP 240
Query: 672 ------LKFKPRNG-TGVIILSPTREFQCNI 743
+ ++PR +IL+PTRE C I
Sbjct: 241 VDQDAGMGYRPRKAYPTTLILAPTRELVCQI 271
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 52.8 bits (121), Expect = 7e-08
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +3
Query: 504 EPTLLGIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFK 683
E L GI G+ T + +Q++AI + +GRD++ A++G+GKT F SI ++ +
Sbjct: 30 EDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATF---SIGILQSIDLS 86
Query: 684 PRNGTGVIILSPTREFQCNI 743
R+ T +ILSPTRE I
Sbjct: 87 VRD-TQALILSPTRELAVQI 105
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.0 bits (109), Expect = 2e-06
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 507 PTLLG-IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFK 683
P +LG + GF IQ+ IP G D++G A TGSGKTLAF IP ++ + L+
Sbjct: 131 PEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILE--HCLRNV 188
Query: 684 PRNGTGVIILSPTRE 728
++++PTRE
Sbjct: 189 DAKYVQALVVAPTRE 203
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 46.4 bits (105), Expect = 6e-06
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +3
Query: 468 DQKFTALEGTVCEPTLL-GIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFL 644
D+ + +P LL GI GF + IQ +AI P+L RD++ A++G+GKT F
Sbjct: 15 DEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF- 73
Query: 645 IPSIDLIYKLKFKPRNGTGVIILSPTRE 728
SI ++ K+ + +IL+PTRE
Sbjct: 74 --SISVLQKIDTSLKQ-CQALILAPTRE 98
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 45.6 bits (103), Expect = 1e-05
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +3
Query: 534 GFVTMTEIQAKAIPPLLEGRD-LVGAAKTGSGKTLAFLIPSIDLIYKLKFKPR-NGTGV- 704
GF MT +Q + + + + V AKTG+GKTLAFL+ + + LK KPR N + +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDV--LKGKPRLNSSKIH 114
Query: 705 -IILSPTREFQCNI 743
+ILSPTRE I
Sbjct: 115 SVILSPTRELALQI 128
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 44.4 bits (100), Expect = 2e-05
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Frame = +3
Query: 459 ILSDQKFTALEGTVCEPTLL-GIKDMGFVTMTEIQAKAIPPLLEG--RDLVGAAKTGSGK 629
+ S + F LE +P LL GI M F ++IQ KA+P LL R+++G +++G+GK
Sbjct: 110 LFSVKSFEELE---LKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGK 166
Query: 630 TLAFLIPSIDLIYKLKFKPRNGTGVIILSPTRE 728
T AF + + + KP+ I L+P+RE
Sbjct: 167 TAAFALTMLSRVDASVPKPQ----AICLAPSRE 195
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 43.6 bits (98), Expect = 4e-05
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Frame = +3
Query: 480 TALEGTVCEPTLL-GIKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSI 656
T + +P LL I D GF +E+Q IP + G D++ AK+G GKT F++ ++
Sbjct: 51 TGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTL 110
Query: 657 DLIYKLKFKPRNG-TGVIILSPTREFQCNI 743
I +P +G V++L TRE I
Sbjct: 111 QQI-----EPVDGEVSVLVLCHTRELAFQI 135
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 43.2 bits (97), Expect = 5e-05
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Frame = +3
Query: 531 MGFVTMTEIQAKAIPPLL--EGRDLVGAAKTGSGKTLAFLIPSIDLIYKLK---FKPRNG 695
M T IQ+ +P LL + +D A+TGSGKTLA+L+P + + +L +G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 696 TGVIILSPTRE 728
+I++PTRE
Sbjct: 217 IYAVIMAPTRE 227
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.1 bits (72), Expect = 0.056
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 588 GRDLVGAAKTGSGKTLAFLIPSIDLIYKLKFKPRNGTGVIILSPTREFQCNI 743
G D+ +A TGSGKTL+++IP + + + PR +++ PTRE +
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCL-SHRTVPR--LRCVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 579 LLEGRDLVGAAKTGSGKTLAFLIPSI 656
LL +L+ TG GK+L+FLIP++
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 579 LLEGRDLVGAAKTGSGKTLAFLIPSI 656
LL +L+ TG GK+L+FLIP++
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 558 QAKAIPPLLEGRDLVGAAKTGSGKTLAFLIPSI 656
Q +AI L G+D+ TG GK+L + +P++
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLPAV 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,729
Number of Sequences: 5004
Number of extensions: 42913
Number of successful extensions: 138
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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