Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F11
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   1e-09
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   5.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   8.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.4 bits (125), Expect = 1e-09
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
 Frame = +3

Query: 522 IKDMGFVTMTEIQAKAIPPLLEGRDLVGAAKTGSGKTLAFLIP--------SIDLIYKLK 677
           IK  G+   T +Q  A+P ++ GRDL+  A+TGSGKT AF +P        S+DL+    
Sbjct: 211 IKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTST 270

Query: 678 F-KPRNGTGVIILSPTREFQCNI 743
           + +P+    V+I+SPTRE    I
Sbjct: 271 YCEPQ----VVIVSPTRELTIQI 289


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +2

Query: 554 DSSQSYTSFVGRQGSCGSCQNWLWKNTSVLNTVYRPYIQTKI*TK 688
           D   ++ S+V    +  +  NWLW          R YI+ K  T+
Sbjct: 51  DKGINWRSYVVCDVAYNNVNNWLWTPFIERGPANRMYIEIKFTTR 95


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 183 QKTDSNPEPEKDIEALNNEKEAK--KRVVQDGDTN 281
           +K + NP+P+  + ALN  K     K V Q G T+
Sbjct: 26  KKRNKNPQPKNAVCALNELKSGAVYKVVDQTGPTH 60


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  YREFLKILLWFLVHVFEVLF 84
           Y+ FLK   W  VHV E  F
Sbjct: 117 YQTFLKTAAWARVHVNEGQF 136


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 526 LIPKRVGSHTVPSSAVNF*SDSIP 455
           L+P+ +  HT P S +   + ++P
Sbjct: 653 LLPRPISCHTTPDSFIEAPNKTLP 676


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 410 GKKIEQRFTWIKPLLRYTIRSKIHCT 487
           GKKI   F  ++PL+ +   S ++ T
Sbjct: 240 GKKITHFFDLVRPLIAFKFHSILNRT 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,548
Number of Sequences: 438
Number of extensions: 2539
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)