Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F08
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   3.5  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   6.1  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   8.1  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 342 DPRALPQQNAHHLIPNRYYLPLHLDFLRQHHRRRRPIFVLLEF 214
           +P     Q +  L    Y+LP++ DF+R+  ++ RP  + + F
Sbjct: 515 NPNIATIQTSKGLADKVYFLPVNADFVRKVIKQERPDSIYVTF 557


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 521 HKWKSDIXXLGXARSINGSSCFGIHIDS 604
           + W +D       + +N S CFGI++D+
Sbjct: 297 YTWSNDRLWSKNRQPLNNSECFGINLDA 324


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 671  STWNPXL*TGXTNXIXETGWGIXLGSGSPSPNAK 772
            +TW     T   + I E+ WG+ LG+ +P+ + +
Sbjct: 1041 NTWKISRSTSNKSLIPESPWGVALGAFTPNASTQ 1074


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,104
Number of Sequences: 5004
Number of extensions: 42537
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)