Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F08
         (876 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110383-1|AAI10384.1|  594|Homo sapiens FIP1 like 1 (S. cerevis...    41   0.005
BC052959-1|AAH52959.1|  559|Homo sapiens FIP1L1 protein protein.       41   0.005
BC024016-1|AAH24016.1|  559|Homo sapiens FIP1L1 protein protein.       41   0.005
BC017724-1|AAH17724.1|  378|Homo sapiens FIP1L1 protein protein.       41   0.005
AY366510-1|AAQ88277.1|  594|Homo sapiens pre-mRNA 3'end processi...    41   0.005
AY229892-1|AAP69563.1|  849|Homo sapiens FIP1L1/PDGFRA fusion pr...    41   0.005

>BC110383-1|AAI10384.1|  594|Homo sapiens FIP1 like 1 (S.
           cerevisiae) protein.
          Length = 594

 Score = 41.1 bits (92), Expect = 0.005
 Identities = 42/127 (33%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
 Frame = +3

Query: 324 EVTREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGS-QYASLNIKRGVGLVASAGGPX 500
           +VT  + + D+DS ++          V VTIG+IK+G+ QY S      V L    GG  
Sbjct: 77  KVTETEDDSDSDSDDD-------EDDVHVTIGDIKTGAPQYGSYG-TAPVNLNIKTGG-- 126

Query: 501 KXRSVTTTSGKVTLXDLXGPEVLMGVPALXFIL-IL*XXXXE*PGC*XFXLFHYXFNEVH 677
             R   TT  KV   DL  P  + GVP L   L          PG      F+Y FNE  
Sbjct: 127 --RVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDT 184

Query: 678 GTPXCER 698
               CE+
Sbjct: 185 WKAYCEK 191


>BC052959-1|AAH52959.1|  559|Homo sapiens FIP1L1 protein protein.
          Length = 559

 Score = 41.1 bits (92), Expect = 0.005
 Identities = 42/127 (33%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
 Frame = +3

Query: 324 EVTREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGS-QYASLNIKRGVGLVASAGGPX 500
           +VT  + + D+DS ++          V VTIG+IK+G+ QY S      V L    GG  
Sbjct: 65  KVTETEDDSDSDSDDD-------EDDVHVTIGDIKTGAPQYGSYG-TAPVNLNIKTGG-- 114

Query: 501 KXRSVTTTSGKVTLXDLXGPEVLMGVPALXFIL-IL*XXXXE*PGC*XFXLFHYXFNEVH 677
             R   TT  KV   DL  P  + GVP L   L          PG      F+Y FNE  
Sbjct: 115 --RVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDT 172

Query: 678 GTPXCER 698
               CE+
Sbjct: 173 WKAYCEK 179


>BC024016-1|AAH24016.1|  559|Homo sapiens FIP1L1 protein protein.
          Length = 559

 Score = 41.1 bits (92), Expect = 0.005
 Identities = 42/127 (33%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
 Frame = +3

Query: 324 EVTREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGS-QYASLNIKRGVGLVASAGGPX 500
           +VT  + + D+DS ++          V VTIG+IK+G+ QY S      V L    GG  
Sbjct: 65  KVTETEDDSDSDSDDD-------EDDVHVTIGDIKTGAPQYGSYG-TAPVNLNIKTGG-- 114

Query: 501 KXRSVTTTSGKVTLXDLXGPEVLMGVPALXFIL-IL*XXXXE*PGC*XFXLFHYXFNEVH 677
             R   TT  KV   DL  P  + GVP L   L          PG      F+Y FNE  
Sbjct: 115 --RVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDT 172

Query: 678 GTPXCER 698
               CE+
Sbjct: 173 WKAYCEK 179


>BC017724-1|AAH17724.1|  378|Homo sapiens FIP1L1 protein protein.
          Length = 378

 Score = 41.1 bits (92), Expect = 0.005
 Identities = 42/127 (33%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
 Frame = +3

Query: 324 EVTREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGS-QYASLNIKRGVGLVASAGGPX 500
           +VT  + + D+DS ++          V VTIG+IK+G+ QY S      V L    GG  
Sbjct: 62  KVTETEDDSDSDSDDD-------EDDVHVTIGDIKTGAPQYGSYG-TAPVNLNIKTGG-- 111

Query: 501 KXRSVTTTSGKVTLXDLXGPEVLMGVPALXFIL-IL*XXXXE*PGC*XFXLFHYXFNEVH 677
             R   TT  KV   DL  P  + GVP L   L          PG      F+Y FNE  
Sbjct: 112 --RVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDT 169

Query: 678 GTPXCER 698
               CE+
Sbjct: 170 WKAYCEK 176


>AY366510-1|AAQ88277.1|  594|Homo sapiens pre-mRNA 3'end processing
           factor FIP1 protein.
          Length = 594

 Score = 41.1 bits (92), Expect = 0.005
 Identities = 42/127 (33%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
 Frame = +3

Query: 324 EVTREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGS-QYASLNIKRGVGLVASAGGPX 500
           +VT  + + D+DS ++          V VTIG+IK+G+ QY S      V L    GG  
Sbjct: 77  KVTETEDDSDSDSDDD-------EDDVHVTIGDIKTGAPQYGSYG-TAPVNLNIKTGG-- 126

Query: 501 KXRSVTTTSGKVTLXDLXGPEVLMGVPALXFIL-IL*XXXXE*PGC*XFXLFHYXFNEVH 677
             R   TT  KV   DL  P  + GVP L   L          PG      F+Y FNE  
Sbjct: 127 --RVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDT 184

Query: 678 GTPXCER 698
               CE+
Sbjct: 185 WKAYCEK 191


>AY229892-1|AAP69563.1|  849|Homo sapiens FIP1L1/PDGFRA fusion
           protein protein.
          Length = 849

 Score = 41.1 bits (92), Expect = 0.005
 Identities = 42/127 (33%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
 Frame = +3

Query: 324 EVTREDQNGDADSQENGXXXXXXXXXVKVTIGEIKSGS-QYASLNIKRGVGLVASAGGPX 500
           +VT  + + D+DS ++          V VTIG+IK+G+ QY S      V L    GG  
Sbjct: 77  KVTETEDDSDSDSDDD-------EDDVHVTIGDIKTGAPQYGSYG-TAPVNLNIKTGG-- 126

Query: 501 KXRSVTTTSGKVTLXDLXGPEVLMGVPALXFIL-IL*XXXXE*PGC*XFXLFHYXFNEVH 677
             R   TT  KV   DL  P  + GVP L   L          PG      F+Y FNE  
Sbjct: 127 --RVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDT 184

Query: 678 GTPXCER 698
               CE+
Sbjct: 185 WKAYCEK 191


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,879,138
Number of Sequences: 237096
Number of extensions: 1892057
Number of successful extensions: 3348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3345
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)