Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F05
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     31   0.94 
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794...    30   2.2  
04_03_0904 + 20717005-20718087                                         29   3.8  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   3.8  

>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 20/62 (32%), Positives = 23/62 (37%)
 Frame = +3

Query: 639 KXGXXPXKNFXXXXPKRAPXPKXXPXGGFXXXAPPPGXX*KXXPPXRGGQPREIXNRXSR 818
           K G  P        PK  P PK  P  G     P PG   K  PP  G +P+    +   
Sbjct: 158 KPGPKPKPKPSPPKPKPGPKPKP-PKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPGP 216

Query: 819 KP 824
           KP
Sbjct: 217 KP 218


>11_02_0065 -
           7938007-7938393,7939292-7939435,7940597-7940665,
           7940762-7940809,7941488-7941584,7941688-7941767,
           7941841-7941912,7942256-7942350,7943903-7943984,
           7945176-7945209,7945255-7945262,7945657-7946058
          Length = 505

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 506 PPPGXXGFFFXAXXPXPPXKXXAPGFXGGGG 598
           PPP    FF     P PP     P   GGGG
Sbjct: 67  PPPPPAAFFAAVPPPPPPPFEYYPAVGGGGG 97



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = +2

Query: 503 PPPPGXXGFFFXAXXPXPPXKXXAPGFXGGGGXFXXP 613
           PPPP     FF A  P PP         GGGG F  P
Sbjct: 68  PPPPAA---FFAAVPPPPPPPFEYYPAVGGGGGFGAP 101


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/54 (33%), Positives = 19/54 (35%)
 Frame = +2

Query: 680 PQKGPXPXXXPXWGVXXXGPPPRXKXKKXPPXSXGATPXNXKPXFPKTPVPXXP 841
           PQ  P P   P        PPP  K +  P      TP   KP    TP P  P
Sbjct: 279 PQPKPTPTPTPYTPTPKPNPPPTYKPQPKPT----PTPTPYKPQPKPTPSPYTP 328


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/56 (33%), Positives = 20/56 (35%)
 Frame = -3

Query: 631 KTXXPXXGXEXPPPPPKXGGXXFXXGXXXXGPKKKXPXPXGGGXFXXXKKXPXPPP 464
           K   P    + PPPPP   G          GP    P P GG      K  P PPP
Sbjct: 333 KAAPPPPPPKGPPPPPPAKGP--PPPPPPKGPSPPPPPPPGG-----KKGGPPPPP 381



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 736 PPPPXKXKKXPPXXXGGNPXKXKTGFPENPCP 831
           PPPP K    PP   G  P     G P  P P
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPP 359



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
 Frame = +3

Query: 654 PXKNFXXXXPKRAPXPKXXPXGGFXXXAPPPG--XX*KXXPPXRGGQPR 794
           P K      P + P P   P G      PPPG        PP +GG  R
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASR 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,846,116
Number of Sequences: 37544
Number of extensions: 385858
Number of successful extensions: 1506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)