Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F04
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   3.6  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    27   4.8  

>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 778 CY*XKGVHHLYS--LHLLCRTCGALD 707
           C+  KG  H+     H+LC TCGA+D
Sbjct: 89  CHNCKGNGHISKDCPHVLCTTCGAID 114


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 709 LMHHKFCIIDAVNIDDVXPLXNSRVIELDQSGT 807
           L+HHK   I  + +DD  P+ N  V++LD++ T
Sbjct: 157 LLHHKAMSIVGLLLDDTDPMIN--VMKLDKAPT 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,096
Number of Sequences: 5004
Number of extensions: 59802
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)