Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_F02
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    25   0.76 
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    23   7.8  
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 25.4 bits (53), Expect(2) = 0.76
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 776 PPPPPPXXXXXFFFXXXGGGGGG 708
           PPPPPP           GGGGGG
Sbjct: 54  PPPPPPACG-----GGCGGGGGG 71



 Score = 24.6 bits (51), Expect(2) = 0.76
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 725 GGGGGGXKXKXXXGGXXXFXPPXP 654
           GGGGGG       GG     PP P
Sbjct: 93  GGGGGGCGGGGGCGGGCAPPPPPP 116


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 709 PPPPPPXXKKKXXXXXXGGGGG 774
           PPPPPP  +         GGGG
Sbjct: 534 PPPPPPPPRSSGANGNRNGGGG 555


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 140 PGARGSPPLXXGAXGXPPFGXGVIWVP 220
           PG  G PP+  G  G PP   G+  +P
Sbjct: 603 PGMAGMPPMHPGMQGMPPMHPGMQGMP 629


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 23.4 bits (48), Expect(2) = 7.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 516 GGGGGGGG 493
           GGGGGGGG
Sbjct: 362 GGGGGGGG 369



 Score = 23.0 bits (47), Expect(2) = 7.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 531 PPXXXGGGGGGG 496
           PP    GGGGGG
Sbjct: 314 PPRTPAGGGGGG 325


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 768 PPPPPXXXXFFFXXGGGGGG 709
           P PPP      F  GGGGGG
Sbjct: 721 PVPPPVAPAVAFAGGGGGGG 740


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,321,753
Number of Sequences: 27780
Number of extensions: 190938
Number of successful extensions: 4262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3546
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)