Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_F01
(934 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 36 0.006
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 31 0.23
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 31 0.31
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 28 1.6
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 3.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 6.6
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 26 8.7
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 26 8.7
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 36.3 bits (80), Expect = 0.006
Identities = 34/128 (26%), Positives = 57/128 (44%)
Frame = +3
Query: 303 FFFTWAKAELFTAITDVEPLLETHKRIIDDLDDYLQKEERRLFTLKKHLNLYKREHERAM 482
+ F+ ++ + ++DVEP KRII L R L +L L E +
Sbjct: 579 YSFSVSRQSIIQILSDVEPYEPFWKRIIQ-----LDISRRHLDSLIGLSELCPSIEELTL 633
Query: 483 DDIPNYLGNPINAFTLIKRLTADLDFIEDSIKIGTEYIKNVTMNHVDVKYPSLEDLTGAA 662
+ GN I T DL+ +E+ + T + + + ++D+ Y LEDLTG +
Sbjct: 634 E------GNEIAYLTGCPVTIRDLNAVENRLSSLTSFSNLLNLQYLDISYNQLEDLTGLS 687
Query: 663 QALTRLQE 686
+L L+E
Sbjct: 688 -SLIHLRE 694
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 31.1 bits (67), Expect = 0.23
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 345 TDVEPLLETHKRIIDDLDDYLQKEERRLFTLKKHLNLY----KREHERAMDDIPNYLGNP 512
T V LL H+ + L DYL+ E L L H+ LY K E + +Y+ N
Sbjct: 143 TAVSHLLRNHQALFKYLCDYLRSGEFPLTVLIHHVMLYQYYPKSLQEALWAAVEHYVNNS 202
Query: 513 INAFTLIKRL 542
A++ +++L
Sbjct: 203 GEAYSTVQKL 212
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 30.7 bits (66), Expect = 0.31
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 290 SYRSYCFHFCRNKYENDSRTCRSA 219
S+R YCF CRNKY + R SA
Sbjct: 12 SFRRYCFVQCRNKYHSHVRYLSSA 35
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 387 DDLDDYLQKEERRLFTLKKHLNLYKREHERAMDDIPNY 500
DD DY + ER+ K+H++ Y R D +Y
Sbjct: 188 DDYYDYPRYSERKSLNSKRHVDNYNENRRRHYDSYSSY 225
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 269 HFCRNKYENDSRTCRSANCFTDKRTSLRIIRKTYCSLTS 153
HF R K END+ SAN + L+++ K S+T+
Sbjct: 65 HFIR-KVENDNMDAISANINSKLENRLKVLEKAISSITN 102
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 420 RRLFTLKKHLNLYKREHERAMDDI---PNYLGNPINAFTLIKRLTADL 554
RRLF L K N Y +E + I ++LGNP+ FT I AD+
Sbjct: 2733 RRLFELVK--NHYSQELLSQVHKIVGSADFLGNPVGLFTTITSGFADI 2778
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 516 NAFTLIKRLTADLDFIEDSIKIGTEYIKNVTMNHVDVKYPSLEDLTG 656
+A +L+ LTA ++ + I T +K + H+D + +++TG
Sbjct: 362 SAVSLLPELTARKQILDMHMNIATALLKAIQERHLDDFFQLEDNITG 408
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 8.7
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 2/166 (1%)
Frame = +3
Query: 288 AFLLLFFFTWAKAELFTAITDVEPLLETHKRIIDDLDDYLQKEERRLFTLKKHLNLYKRE 467
A L + F T A E+ T + +L +++ LD+ E + TLKKHL Y+
Sbjct: 48 ATLFVSFLTSASGEIAT--NNNRKILMPQD-VLNALDEIEYPEFSK--TLKKHLEAYELA 102
Query: 468 HERAMDDIPNY--LGNPINAFTLIKRLTADLDFIEDSIKIGTEYIKNVTMNHVDVKYPSL 641
+ +PN + N A + T LD +D ++ +++ N V+ +
Sbjct: 103 LKEKRLKLPNVSDVDNRKKA-KIDAHDTTPLDEEKDELE-EERIAEDIAQNEVEQNIDDV 160
Query: 642 EDLTGAAQALTRLQETYYLNVHDLAEGILNGVSYSTPMTASDCYEL 779
EDL L E+ + L + N + S+ + + +L
Sbjct: 161 EDLEEVNDTLDANAESPQIETIHLTDATGNPIEDSSESDSEESLQL 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,568,698
Number of Sequences: 5004
Number of extensions: 73805
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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