Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E23
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.12 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.20 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.4  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 571 PPPPPXXXXXPPLPPPPP 624
           PPPPP     PP  PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +1

Query: 571 PPPPPXXXXXP--PLPPPPPG 627
           PPPPP     P  P PPPPPG
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 574 PPPPXXXXXPPLPPPPPG 627
           PPP      PP PPPPPG
Sbjct: 752 PPPAPIMGGPPPPPPPPG 769



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 571 PPPPPXXXXXPPLPPPPP 624
           PPPPP      P PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 571 PPPPPXXXXXPPLPPPPP 624
           PPPP      PP PPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 571 PPPPPXXXXXPPLPPPPP 624
           P PPP      P PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 562 KXXPPPPPXXXXXPPLPPPPP 624
           K  PPPPP      P P P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIP 750


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 571  PPPPPXXXXXPPLPPPPP 624
            PPPPP     PP  PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMP 1724



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
 Frame = +1

Query: 571  PPPP--PXXXXXPPLPPPPP 624
            PPPP  P     PP  PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 562 KXXPPPPPXXXXXPPLPPPPP 624
           K  PPPPP      P  PP P
Sbjct: 741 KHHPPPPPVRSSISPSMPPAP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,349
Number of Sequences: 5004
Number of extensions: 24632
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)