Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E22
         (999 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.59 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 503 PPXGGXXPPPPLFFXXKKXXXPPPPXG 583
           PP     PPPP  F       PPPP G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 854 PPPPPPXGXXXKKKKK 901
           PPPPPP G   K+K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 852 PPPPPPXXXXXKKKKK 899
           PPPPPP     K+K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39



 Score = 25.4 bits (53), Expect(2) = 1.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 856 PPPPPXXXXXKKKKKKKKXXXG 921
           PPPPP     KK+K K     G
Sbjct: 24  PPPPPPPGYVKKRKNKTPAQSG 45



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 853 PPPPPP 870
           PPPPPP
Sbjct: 9   PPPPPP 14


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,180
Number of Sequences: 5004
Number of extensions: 25362
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)