Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E22
         (999 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       32   0.62 
03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856...    30   3.3  
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    29   5.8  
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    29   5.8  
01_01_0083 + 631196-631675                                             29   5.8  
05_01_0142 - 940421-940701,941262-941574                               29   7.7  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    29   7.7  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 503 PPXGGXXPPPPLFFXXKKXXXPPPPXGG 586
           PP G   PPPP     K    PPPP GG
Sbjct: 358 PPKGPSPPPPPPPGGKKGGPPPPPPKGG 385



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 503 PPXGGXXPPPPLFFXXKKXXXPPPPXGG 586
           PP  G  PPPP     KK   PPPP  G
Sbjct: 357 PPPKGPSPPPPPPPGGKKGGPPPPPPKG 384



 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -3

Query: 619 PPPPQKKXXXXPPPGGGGXXXFFXXKKKGGGGXXPP 512
           PPPP K     PPP  GG           GG   PP
Sbjct: 355 PPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390


>03_03_0038 +
           13984525-13984917,13985351-13985429,13985535-13985628,
           13985712-13985844
          Length = 232

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 837 GXXXXPPPPPPXXXXXKKKKKKK 905
           G    PPPPPP     + KKKKK
Sbjct: 34  GEAKPPPPPPPQLRGGETKKKKK 56



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 838 GXXXXPPPPPPXXXXXKKKKKKK 906
           G    PPPPPP     + KKKKK
Sbjct: 34  GEAKPPPPPPPQLRGGETKKKKK 56


>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -3

Query: 613 PPQKKXXXXPPPGGGGXXXFFXXKKKGGGGXXPP 512
           P   K    PPP  GG        KKGGGG   P
Sbjct: 233 PKMMKQMAMPPPNAGGGGDKKGGGKKGGGGNEIP 266


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 619 PPPPQKKXXXXPPPGGG 569
           PPPP+++    PPPG G
Sbjct: 38  PPPPRRRTPPPPPPGSG 54


>01_01_0083 + 631196-631675
          Length = 159

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = -3

Query: 616 PPPQKKXXXXPPP--GGGGXXXFFXXKKKGGGG 524
           PP        PPP  GGGG   ++     GGGG
Sbjct: 68  PPSSSSYWNYPPPQGGGGGYIPYYQPPAGGGGG 100


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 503 PPXGGXXPPPPLFFXXKKXXXPPPP 577
           PP  G  PPPP  +       PPPP
Sbjct: 41  PPPPGAYPPPPGAYPPPPGAYPPPP 65


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = +2

Query: 503 PPXGGXXPPPP---LFFXXKKXXXPPPPXGG 586
           PP GG  PPPP   L     +   PPP  GG
Sbjct: 298 PPVGGTQPPPPPPPLANGPPRSIPPPPMTGG 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,650,819
Number of Sequences: 37544
Number of extensions: 547114
Number of successful extensions: 8896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5827
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2928685000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)