Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E21
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.40 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   9.4  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -2

Query: 607 GGGXXPPPPPXXGXGXFXGGGGGG 536
           GGG   PPP   G G F G GG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEG 217



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 578 GGGGGGXXPPXGGXGXXXXKGGE 646
           GGG GG  P  GG G     GGE
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGE 216


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 531 GXPPPPPPXKXPXPXXGGGGGXXPPP 608
           G PPPPPP     P   G G   PPP
Sbjct: 759 GGPPPPPPP----PGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
 Frame = +3

Query: 537 PPPPPPXK-XPXPXXGGGGGXXPPPXGGXXXXXXXXXXTQKKXFXPXPPXPPXXXXG 704
           PPPPPP    P P         P P  G                 P PP PP    G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 531 GXPPPPPPXKXPXPXXGGGGGXXPPP 608
           G  PPPPP   P    GG     P P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 23.4 bits (48), Expect(2) = 4.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 613 PXGGGXXPPPPP 578
           P  GG  PPPPP
Sbjct: 756 PIMGGPPPPPPP 767



 Score = 21.4 bits (43), Expect(2) = 4.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 601 GXXPPPPPXXG 569
           G  PPPPP  G
Sbjct: 759 GGPPPPPPPPG 769


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/55 (27%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
 Frame = +3

Query: 537 PPPPPPXK----XPXPXXGGGGGXXPPPXGGXXXXXXXXXXTQKKXFXPXPPXPP 689
           PPPPPP +     P    G      PPP                +     PP PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 531  GXPPPPPPXK-XPXPXXGGGGGXXPPP 608
            G PP PPP +  P P    G    PPP
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPP 1213


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect(2) = 9.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 540 PPPPPXKXPXPXXGGG 587
           PPPPP   P     GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 21.0 bits (42), Expect(2) = 9.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 537 PPPPPP 554
           PPPPPP
Sbjct: 907 PPPPPP 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,329
Number of Sequences: 5004
Number of extensions: 18835
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)