Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E17
         (922 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0696 - 30992899-30993177                                         32   0.74 
04_01_0154 - 1775693-1775942,1776834-1777588                           31   1.7  
05_04_0142 - 18372751-18373338                                         29   3.9  
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740...    29   3.9  
08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004           29   6.9  
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    29   6.9  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.9  

>02_05_0696 - 30992899-30993177
          Length = 92

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -3

Query: 731 LERTTXTGTEIPTAWXY--EKAPRFPEGEKGGQVSGKRQGRNRRAHEGASRGKRLVSL*S 558
           +ER++  GT     W Y  + +PR     + G   GK+QG   +    A+ G R V   +
Sbjct: 1   MERSSSFGTSWADQWDYGGDPSPR-AAARRDGHGGGKKQGGVEKTKAAAATGLRKVKEGT 59

Query: 557 CRGFATSDLSVDFCDARQGGG 495
             GF       D C  +  GG
Sbjct: 60  AHGF---QWIKDKCQKKNAGG 77


>04_01_0154 - 1775693-1775942,1776834-1777588
          Length = 334

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -3

Query: 698 PTAWXYEKAPRFPEGEKGGQVSGKRQ--GRNRRAHEGASRGKRLVSL*SCRGFATSDLSV 525
           P +   + APR P+ E+GG  + +R+    +RR   G S G    S    RG     L +
Sbjct: 65  PASPVEDLAPRRPDRERGGGGAARRRAASSSRRRRRGKSVGGP-SSRRRRRGKTAGGLKL 123

Query: 524 DFCDARQGGGAYGKTPATR 468
               ARQ GGA  +  + R
Sbjct: 124 PTTAARQDGGATRRNSSRR 142


>05_04_0142 - 18372751-18373338
          Length = 195

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -3

Query: 668 RFPEGEKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRG 549
           R  E E+GG   G++QGR R+A   A R +RL +  +C G
Sbjct: 60  RVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAVACWG 98


>01_05_0552 -
           23173106-23173184,23173266-23173411,23173543-23174022,
           23174106-23174161,23175538-23175637,23175708-23175765,
           23176163-23176278,23176915-23176974,23177297-23177383,
           23178250-23178341,23178409-23178587,23178946-23179087,
           23179655-23179706,23180241-23180473,23180569-23180745,
           23180882-23181044,23181242-23181392,23181493-23181574,
           23182193-23182332,23182499-23183013
          Length = 1035

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
 Frame = -3

Query: 734 SLERTTXTGTEIPTAWXYEKAPRFP-EGEKGGQVSGK-RQGRNRRAHEGASRGKRLVSL* 561
           SL++ T     IP        P  P +   GG+++G  RQG+N         GK L  L 
Sbjct: 31  SLQQVTPQSPPIPPRRRGIGNPSIPFDLSDGGELAGSIRQGKNALLESPTGTGKTLCLL- 89

Query: 560 SCRGFATSDLSVDFC----DARQGGGAYGKTPATRPFYGSWP 447
            C   A      +F         GGG  G   + +P YGS P
Sbjct: 90  -CSALAWRRTFGEFLRGGGGGGGGGGGGGGGGSQQPPYGSQP 130


>08_01_0171 - 1447782-1447935,1448016-1448480,1448578-1450004
          Length = 681

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
 Frame = -2

Query: 165 YQLTFWFFSSSRSFLQK-------PRPPKKP 94
           +QLT W+F SS SF QK       P PP  P
Sbjct: 253 HQLTSWYFKSSSSFEQKLAAKVASPPPPSSP 283


>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
 Frame = -2

Query: 165 YQLTFWFFSSSRSFLQK-------PRPPKKP 94
           +QLT W+F SS SF QK       P PP  P
Sbjct: 256 HQLTSWYFKSSSSFEQKLAAKVASPPPPSSP 286


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 306 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 461
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,461,218
Number of Sequences: 37544
Number of extensions: 563250
Number of successful extensions: 1979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1975
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)