Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E17
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   9.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 568 DTRRFPLEAPSCALLFRPCR 627
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 76  IPEVVRRLFWRPRLLQKAPRGTE 144
           IPEV+RRL    + L K+  G +
Sbjct: 784 IPEVMRRLMSEDKRLSKSVNGDQ 806


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 210 WCKSKNCSSVDVAF 251
           W K++NCS +  A+
Sbjct: 110 WAKNENCSGITSAY 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,032
Number of Sequences: 438
Number of extensions: 4981
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)