Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E16
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...   142   8e-35
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   3.7  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    26   6.5  
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po...    26   6.5  

>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score =  142 bits (343), Expect = 8e-35
 Identities = 65/106 (61%), Positives = 79/106 (74%), Gaps = 4/106 (3%)
 Frame = +2

Query: 371 DEDFVDPWTVTGK----SDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGI 538
           +E  V PW V G      + GIDY++LI +FG++KI  E ++RFEK+ G+K H LLRRG 
Sbjct: 4   EEQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGA 63

Query: 539 FFSHRDLXVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKW 676
           FFSHRD  +IL+ +E  K FYLYTGRGPSSDSMHLGHMIPFMF KW
Sbjct: 64  FFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKW 109


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 353 NIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVI 502
           N+   ED+DF+D  T T   +   DY  + ++  +   D ++  +  K I
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSI 398


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +2

Query: 455 SQKIDDELIQRFEKVIGRKAHHLLRRGIFFSHRDLX---VILNLHEAGKKFYLYTGRGPS 625
           SQ + D+  Q F   I R    +   G+   HRDL    ++LN +   K       R  +
Sbjct: 132 SQPLSDDHCQYFTYQILRALKAMHSAGVV--HRDLKPSNLLLNANCDLKVADFGLARSTT 189

Query: 626 SDSMHLGHMIPFMFTKWYR 682
           +   + G M  ++ T+WYR
Sbjct: 190 AQGGNPGFMTEYVATRWYR 208


>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 157 FFSSSRSFLQKPRPPKKPPHY 95
           +F S  +FL K  PPKK  HY
Sbjct: 97  YFGSEETFLWKYFPPKKYVHY 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,129
Number of Sequences: 5004
Number of extensions: 52306
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)