Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_E16
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132853-10|CAB60439.2| 417|Caenorhabditis elegans Hypothetical... 149 3e-36
AL021470-5|CAE17953.1| 417|Caenorhabditis elegans Hypothetical ... 149 3e-36
AB096635-1|BAC76735.1| 417|Caenorhabditis elegans tryptophanyl-... 149 3e-36
AL034393-18|CAE17978.1| 199|Caenorhabditis elegans Hypothetical... 29 3.5
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 29 6.2
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 29 6.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 6.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 6.2
L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical pr... 28 8.1
AC006761-5|AAF60550.3| 425|Caenorhabditis elegans Hypothetical ... 28 8.1
>AL132853-10|CAB60439.2| 417|Caenorhabditis elegans Hypothetical
protein Y80D3A.1 protein.
Length = 417
Score = 149 bits (361), Expect = 3e-36
Identities = 65/103 (63%), Positives = 81/103 (78%)
Frame = +2
Query: 368 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 547
++ED V PW VT TGIDYDKLI +FG +K+D+E+I RFE+V G KA +LRRG+FF+
Sbjct: 29 DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88
Query: 548 HRDLXVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKW 676
HRDL IL+ E GK FYLYTGRG SS S+HLGH++PF+FTKW
Sbjct: 89 HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKW 131
>AL021470-5|CAE17953.1| 417|Caenorhabditis elegans Hypothetical
protein Y80D3A.1 protein.
Length = 417
Score = 149 bits (361), Expect = 3e-36
Identities = 65/103 (63%), Positives = 81/103 (78%)
Frame = +2
Query: 368 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 547
++ED V PW VT TGIDYDKLI +FG +K+D+E+I RFE+V G KA +LRRG+FF+
Sbjct: 29 DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88
Query: 548 HRDLXVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKW 676
HRDL IL+ E GK FYLYTGRG SS S+HLGH++PF+FTKW
Sbjct: 89 HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKW 131
>AB096635-1|BAC76735.1| 417|Caenorhabditis elegans
tryptophanyl-tRNA synthetase (cytosolic)protein.
Length = 417
Score = 149 bits (361), Expect = 3e-36
Identities = 65/103 (63%), Positives = 81/103 (78%)
Frame = +2
Query: 368 EDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGIFFS 547
++ED V PW VT TGIDYDKLI +FG +K+D+E+I RFE+V G KA +LRRG+FF+
Sbjct: 29 DEEDRVTPWEVTTTKATGIDYDKLIVKFGCRKLDEEIIARFERVTGHKASPMLRRGMFFA 88
Query: 548 HRDLXVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKW 676
HRDL IL+ E GK FYLYTGRG SS S+HLGH++PF+FTKW
Sbjct: 89 HRDLTAILDRKEQGKPFYLYTGRGASSGSLHLGHLVPFIFTKW 131
>AL034393-18|CAE17978.1| 199|Caenorhabditis elegans Hypothetical
protein Y18D10A.24 protein.
Length = 199
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 173 VSLVFLSFISGPGSGGGANQRTAPQWMDFERLGILTSMW*LKITFYVKNLNNKMAEDKTI 352
V++V F+ G G GGG WM FER W K+ F K+ + A+ K++
Sbjct: 12 VTVVSGIFVPGGGYGGGGGGVCPADWMTFER---PQGRWCAKVFFGGKSWDAAEAQCKSL 68
Query: 353 NIAI 364
+
Sbjct: 69 GATL 72
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 221 GANQRTAPQWMDFERLGILTSMW*LKITFYV--KNLNNKMA---EDKTINIAIAEDEDFV 385
G + AP+ ++++ +G+ T MW + + YV L+ + ED N++ A D DF
Sbjct: 267 GTPEFCAPEVVNYQPVGLSTDMWTVGVISYVLLSGLSPFLGDSDEDTLANVS-ASDWDFD 325
Query: 386 DP 391
DP
Sbjct: 326 DP 327
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 221 GANQRTAPQWMDFERLGILTSMW*LKITFYV--KNLNNKMA---EDKTINIAIAEDEDFV 385
G + AP+ ++++ +G+ T MW + + YV L+ + ED N++ A D DF
Sbjct: 267 GTPEFCAPEVVNYQPVGLSTDMWTVGVISYVLLSGLSPFLGDSDEDTLANVS-ASDWDFD 325
Query: 386 DP 391
DP
Sbjct: 326 DP 327
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 221 GANQRTAPQWMDFERLGILTSMW*LKITFYV--KNLNNKMA---EDKTINIAIAEDEDFV 385
G + AP+ ++++ +G+ T MW + + YV L+ + ED N++ A D DF
Sbjct: 16093 GTPEFCAPEVVNYQPVGLSTDMWTVGVISYVLLSGLSPFLGDSDEDTLANVS-ASDWDFD 16151
Query: 386 DP 391
DP
Sbjct: 16152 DP 16153
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 221 GANQRTAPQWMDFERLGILTSMW*LKITFYV--KNLNNKMA---EDKTINIAIAEDEDFV 385
G + AP+ ++++ +G+ T MW + + YV L+ + ED N++ A D DF
Sbjct: 16093 GTPEFCAPEVVNYQPVGLSTDMWTVGVISYVLLSGLSPFLGDSDEDTLANVS-ASDWDFD 16151
Query: 386 DP 391
DP
Sbjct: 16152 DP 16153
>L15188-9|AAM22024.1| 618|Caenorhabditis elegans Hypothetical
protein C14B9.2 protein.
Length = 618
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +2
Query: 311 VKNLNNKMAEDKTINIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQK 463
V N+ K +DK A+A++E+F G D+G++++ ++ + +K
Sbjct: 407 VLNIAQKYQKDK-YKFAVADEEEFAKELEELGLGDSGLEHNVVVFGYDGKK 456
>AC006761-5|AAF60550.3| 425|Caenorhabditis elegans Hypothetical
protein Y41G9A.3 protein.
Length = 425
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 263 FQSPSTEEQFFDLHHHRI 210
F+SPS + FFDL HH I
Sbjct: 16 FESPSIPKAFFDLQHHFI 33
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,524,692
Number of Sequences: 27780
Number of extensions: 298290
Number of successful extensions: 681
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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