Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E15
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...   171   2e-43
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.39 
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    29   0.69 

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score =  171 bits (415), Expect = 2e-43
 Identities = 83/193 (43%), Positives = 111/193 (57%)
 Frame = +3

Query: 204 SGEGAQFMTRXXXXXXXXXXXXDFRRICILKGIYPREPRNRKRAQKGAGGIKTLYHTKDI 383
           +G    ++TR            DFRRICILKG+YPREP+N+K+A KG+    T Y+TKDI
Sbjct: 10  AGAARIYITRNQALKKLQLTLADFRRICILKGVYPREPKNKKKANKGSTAPVTFYYTKDI 69

Query: 384 KFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDYPEINIDHIVKERYPTFVXX 563
           ++LLHEPI+ K RE KV+ +K+ +A  + E    ++     P  ++DHI+KERYPTF   
Sbjct: 70  QYLLHEPIVQKFREYKVFARKLSKALGKGELETAKRLEARKPTYSLDHIIKERYPTFHDA 129

Query: 564 XXXXXXXXXXXXXXSTFPSLKKVPRDQSFLCRRLTVEFMHAVIAAKALRKVFVSVKGFYY 743
                         ST P   K+       C RL  EF H VI + +LRK F+S+KG YY
Sbjct: 130 LKDIDDALSMLFLFSTMPVTDKIGAATVANCERLCAEFQHYVIRSNSLRKAFLSIKGIYY 189

Query: 744 QVEFEGQTITWIV 782
           Q E  G+ ITWIV
Sbjct: 190 QAEIFGEQITWIV 202


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 557 NKRGVSFLYYVINVYFWIVPQKLS 486
           NK+G+S+   VI  + W+V QKLS
Sbjct: 278 NKKGLSYFKAVIRAFEWLVEQKLS 301


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 866 TQHHSVNSTMSP*FEXTSSCLWLNENDVXNPGYCLSFKFNLIIESL 729
           T+ HSV+S   P     SS LWL ++ + NP Y        + ES+
Sbjct: 362 TEEHSVSSISVP----KSSSLWLTKSSLINPPYYAKINVETLNESV 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,773,565
Number of Sequences: 5004
Number of extensions: 82931
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)