Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E11
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   2.2  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   3.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   5.1  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   6.7  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.7  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   8.9  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 365 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 460
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 259 PKMPRGQRFXPGLFFTTSVNILAVKLSFPFLSTL-ERF-VTAAIAAMASVNKQMIGXMFV 86
           P    GQ   P  FFTTSV+  A   SFP   T+  +F +  ++A   +++ +       
Sbjct: 112 PPTQGGQPLYPTNFFTTSVS--ASSDSFPNSPTVPSKFSLNPSVATSTNISPRRHAKSHS 169

Query: 85  ACGVSNXKTHN 53
              VS+  +HN
Sbjct: 170 VASVSSPNSHN 180


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 435 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPI 328
           TY+   I SS+ L+   S L++++S  +ASSS  PI
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPI 699


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 822 DQSSLIVVLPKTRMAYXTSRSXKDLRSWKR 911
           D  SL+V L  TR+A+ TS   K    W+R
Sbjct: 46  DIVSLLVALWATRLAHSTSHEPKYTYGWQR 75


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 150 NLSNVLKNGNDNFTARMFTEVVKNNPGXKRCPLGI 254
           N  N+LK  ND   AR +TE V      K  P GI
Sbjct: 56  NSQNLLKQLNDEMKARKYTETVATFSSLK--PFGI 88


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 524 NTVAAKSINEWVEKNTNNRIKXLVNPESLN 613
           +T +A SIN W+ KNT   I+ + N  SL+
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,107
Number of Sequences: 5004
Number of extensions: 56365
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)