Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E10
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0400 - 22608519-22608844,22609044-22609122                       30   2.9  
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956...    29   3.8  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   8.8  

>02_04_0400 - 22608519-22608844,22609044-22609122
          Length = 134

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -2

Query: 575 GXGVFGGGXGXGXXKXXXXXXGXGGFFXXXKXXXXPPGXG 456
           G G  GGG G G         G GG++        PPG G
Sbjct: 68  GGGGGGGGGGGGGGGGGGGGGGGGGYYPPWNGGYYPPGPG 107


>04_04_1641 +
           34993807-34994589,34994924-34995022,34995521-34995648,
           34996095-34996235,34996456-34996542,34996627-34996780,
           34998569-34998628,34999019-34999447,34999524-34999819,
           35000278-35000407,35000690-35001187
          Length = 934

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 498 KPXXPXGXGXXFXXPXPXPPPKNPXP 575
           KP  P      F  P P PPP +P P
Sbjct: 22  KPFKPLSSAAPFRRPSPPPPPPSPVP 47


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 540 PXPXPPPKNPXPXXFGXGXG 599
           P P PPP++P P   G G G
Sbjct: 9   PPPPPPPQHPPPPQAGGGGG 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,112,875
Number of Sequences: 37544
Number of extensions: 168848
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)