Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E09
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.7  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   3.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/37 (29%), Positives = 13/37 (35%)
 Frame = +3

Query: 372 PPPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPP 482
           P PG     +   +G PP    GPP       G   P
Sbjct: 45  PDPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYP 81


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 80  YCGVVDPLARRAKS*GIPYSXM 15
           YCG+ D L    +S G P+  M
Sbjct: 626 YCGIKDKLYPDRRSMGYPFDRM 647


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 17  SHYREFLKILLCELTGRQLHSRE 85
           SHY+E +   + E  GR+  +RE
Sbjct: 571 SHYKEHIMRSITESGGRRRQTRE 593


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,052
Number of Sequences: 336
Number of extensions: 2321
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)