Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E09
         (772 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X07881-1|CAA30728.1|  309|Homo sapiens proline-rich protein G1 p...    31   3.5  
BC096210-1|AAH96210.1|  309|Homo sapiens PRB3 protein protein.         31   3.5  
BC096209-1|AAH96209.1|  309|Homo sapiens PRB3 protein protein.         31   3.5  
X17568-1|CAB57868.1|  240|Homo sapiens snRNP B' protein protein.       31   6.0  
X17567-1|CAB57867.1|  231|Homo sapiens snRNP B protein protein.        31   6.0  
X15893-1|CAA33902.1|  231|Homo sapiens protein ( Human B cod gen...    31   6.0  
M34082-1|AAA36579.1|  233|Homo sapiens protein ( Human small nuc...    31   6.0  
M34081-1|AAA36578.1|  224|Homo sapiens protein ( Human small nuc...    31   6.0  
CR456969-1|CAG33250.1|  240|Homo sapiens SNRPB protein.                31   6.0  
BC080516-1|AAH80516.1|  231|Homo sapiens small nuclear ribonucle...    31   6.0  
BC003530-1|AAH03530.1|  234|Homo sapiens SNRPB protein protein.        31   6.0  
AY742712-1|AAU89981.1|  231|Homo sapiens small nuclear ribonucle...    31   6.0  
AL049650-8|CAB46715.1|  240|Homo sapiens small nuclear ribonucle...    31   6.0  
AL049650-7|CAB46714.1|  231|Homo sapiens small nuclear ribonucle...    31   6.0  

>X07881-1|CAA30728.1|  309|Homo sapiens proline-rich protein G1
           protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
 Frame = +3

Query: 261 GXPXXXXPXGGGXKNFXPFYPLXPWEKXXPXGKF*KXPPPGXXGKPLFXXRGXPPQ---X 431
           G P    P GG      P +P  P E   P G      PP   GKP     G PPQ    
Sbjct: 118 GEPEGPPPQGGNQSQGPPPHPGKP-EGPPPQGGNQSQGPPPRPGKP----EGPPPQGGNQ 172

Query: 432 XKGPPXXXXXXXGXXP 479
            +GPP       G  P
Sbjct: 173 SQGPPPRPGKPEGPPP 188


>BC096210-1|AAH96210.1|  309|Homo sapiens PRB3 protein protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
 Frame = +3

Query: 261 GXPXXXXPXGGGXKNFXPFYPLXPWEKXXPXGKF*KXPPPGXXGKPLFXXRGXPPQ---X 431
           G P    P GG      P +P  P E   P G      PP   GKP     G PPQ    
Sbjct: 139 GKPEGPPPQGGNQSQGPPPHPGKP-EGPPPQGGNQSQGPPPRPGKP----EGPPPQGGNQ 193

Query: 432 XKGPPXXXXXXXGXXP 479
            +GPP       G  P
Sbjct: 194 SQGPPPRPGKPEGPPP 209


>BC096209-1|AAH96209.1|  309|Homo sapiens PRB3 protein protein.
          Length = 309

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
 Frame = +3

Query: 261 GXPXXXXPXGGGXKNFXPFYPLXPWEKXXPXGKF*KXPPPGXXGKPLFXXRGXPPQ---X 431
           G P    P GG      P +P  P E   P G      PP   GKP     G PPQ    
Sbjct: 139 GKPEGPPPQGGNQSQGPPPHPGKP-EGPPPQGGNQSQGPPPRPGKP----EGPPPQGGNQ 193

Query: 432 XKGPPXXXXXXXGXXP 479
            +GPP       G  P
Sbjct: 194 SQGPPPRPGKPEGPPP 209


>X17568-1|CAB57868.1|  240|Homo sapiens snRNP B' protein protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 223 PPPGMRG 229


>X17567-1|CAB57867.1|  231|Homo sapiens snRNP B protein protein.
          Length = 231

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 223 PPPGMRG 229


>X15893-1|CAA33902.1|  231|Homo sapiens protein ( Human B cod gene
           for B/B' snRNP associated protein. ).
          Length = 231

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 223 PPPGMRG 229


>M34082-1|AAA36579.1|  233|Homo sapiens protein ( Human small
           nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
          Length = 233

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 162 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 215

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 216 PPPGMRG 222


>M34081-1|AAA36578.1|  224|Homo sapiens protein ( Human small
           nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
          Length = 224

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 162 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 215

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 216 PPPGMRG 222


>CR456969-1|CAG33250.1|  240|Homo sapiens SNRPB protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 223 PPPGMRG 229


>BC080516-1|AAH80516.1|  231|Homo sapiens small nuclear
           ribonucleoprotein polypeptides B and B1 protein.
          Length = 231

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 223 PPPGMRG 229


>BC003530-1|AAH03530.1|  234|Homo sapiens SNRPB protein protein.
          Length = 234

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 223 PPPGMRG 229


>AY742712-1|AAU89981.1|  231|Homo sapiens small nuclear
           ribonucleoprotein polypeptide B protein.
          Length = 231

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 223 PPPGMRG 229


>AL049650-8|CAB46715.1|  240|Homo sapiens small nuclear
           ribonucleoprotein polypeptides B and B1 protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 223 PPPGMRG 229


>AL049650-7|CAB46714.1|  231|Homo sapiens small nuclear
           ribonucleoprotein polypeptides B and B1 protein.
          Length = 231

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 21/67 (31%), Positives = 21/67 (31%)
 Frame = +3

Query: 375 PPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXXS 554
           PPG  G P    RG PP    GPP       G  PP         G   P          
Sbjct: 169 PPGRGGPPPPMGRGAPPPGMMGPP------PGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222

Query: 555 PPXGGXG 575
           PP G  G
Sbjct: 223 PPPGMRG 229


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,114,449
Number of Sequences: 237096
Number of extensions: 2339963
Number of successful extensions: 4567
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)