Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E09
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   2.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   2.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   2.8  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/92 (22%), Positives = 21/92 (22%)
 Frame = +3

Query: 372 PPPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXX 551
           PPP     PL      PP    G P          PP         GG  P         
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299

Query: 552 SPPXGGXGGXXKKXPXXXXXXXXXXXXXPPPP 647
            PP  G        P              PPP
Sbjct: 300 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/92 (22%), Positives = 21/92 (22%)
 Frame = +3

Query: 372 PPPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXX 551
           PPP     PL      PP    G P          PP         GG  P         
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320

Query: 552 SPPXGGXGGXXKKXPXXXXXXXXXXXXXPPPP 647
            PP  G        P              PPP
Sbjct: 321 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/92 (22%), Positives = 21/92 (22%)
 Frame = +3

Query: 372 PPPGXXGKPLFXXRGXPPQXXKGPPXXXXXXXGXXPPXXKXXXXXXGGFXPXXXXXXXXX 551
           PPP     PL      PP    G P          PP         GG  P         
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305

Query: 552 SPPXGGXGGXXKKXPXXXXXXXXXXXXXPPPP 647
            PP  G        P              PPP
Sbjct: 306 PPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/72 (27%), Positives = 20/72 (27%)
 Frame = -2

Query: 768 PPPPXXXXXXKXXXXPPPPXFXXXXXXXXXXXKXFXXPXXXGGGXXXXXXXXKXXXPXGX 589
           PPPP           PPPP                  P   GG             P G 
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPP-----PPPPGGLPPISGGPPPPPPPPGG 767

Query: 588 FXXXPPPPPXGG 553
               PPPPP GG
Sbjct: 768 CPPPPPPPPPGG 779


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/72 (27%), Positives = 20/72 (27%)
 Frame = -2

Query: 768 PPPPXXXXXXKXXXXPPPPXFXXXXXXXXXXXKXFXXPXXXGGGXXXXXXXXKXXXPXGX 589
           PPPP           PPPP                  P   GG             P G 
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPP-----PPPPGGLPPISGGPPPPPPPPGG 767

Query: 588 FXXXPPPPPXGG 553
               PPPPP GG
Sbjct: 768 CPPPPPPPPPGG 779


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/72 (27%), Positives = 20/72 (27%)
 Frame = -2

Query: 768 PPPPXXXXXXKXXXXPPPPXFXXXXXXXXXXXKXFXXPXXXGGGXXXXXXXXKXXXPXGX 589
           PPPP           PPPP                  P   GG             P G 
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPP-----PPPPGGLPPISGGPPPPPPPPGG 350

Query: 588 FXXXPPPPPXGG 553
               PPPPP GG
Sbjct: 351 CPPPPPPPPPGG 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,101,755
Number of Sequences: 27780
Number of extensions: 312264
Number of successful extensions: 836
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)