Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E07
         (920 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4X6T3 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  
UniRef50_Q4SUB2 Cluster: Chromosome 3 SCAF13974, whole genome sh...    33   7.8  

>UniRef50_Q4X6T3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 141

 Score = 34.3 bits (75), Expect = 4.4
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 744 INPXVSPXXPXPXTQRXEKXXXRKXPXNPXFPFFPXXXPPPSSFXXXPP 890
           ++P +SP  P P     +    R+ P  P  P FP   P PS F    P
Sbjct: 24  LSPFLSPFPPSPNPLPLDPPRARRRPPTPFPPPFPSPIPTPSPFFSFQP 72


>UniRef50_Q4SUB2 Cluster: Chromosome 3 SCAF13974, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 3 SCAF13974, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 692

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 18/65 (27%), Positives = 21/65 (32%)
 Frame = -2

Query: 592 YPXIXXKXVXPPLGGVXLVAAXEXTGXPPXXPXXXKXPPXRPXSFXRXLGXFXXQXXPPX 413
           +P +    + PP  G            PP  P     PP  P      L  F     PP 
Sbjct: 78  HPLLPPPPLPPPQTGCASPGFYSPLQEPPACPVFLPLPPPPPPPPPPPLPSFTLSPPPPP 137

Query: 412 PPPXP 398
           PPP P
Sbjct: 138 PPPPP 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,816,186
Number of Sequences: 1657284
Number of extensions: 6076739
Number of successful extensions: 17182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15453
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84441173866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)