Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E07
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    33   0.38 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.7  

>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 26/108 (24%), Positives = 29/108 (26%)
 Frame = +1

Query: 547 PPPKGXILFSTXXXGNPXKKXLSKGXQKAXXPPKXRLXGVFP*FPPPXXXSXKXTXI*KV 726
           PPPKG         G P      +G      PP  +  G  P  PPP       +     
Sbjct: 66  PPPKGTGTPPPPPTGEPQDLSAEEGNASRRPPPPPKGTGTPP--PPPTGEPQDLSGEGNA 123

Query: 727 GNXXXXXXXXXXXXXPPPXHNVXKXXXXGNXPXTPXSPFFPXXXPPPP 870
                          PPP          GN    P  P      PPPP
Sbjct: 124 SRRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPP 171



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 26/108 (24%), Positives = 30/108 (27%)
 Frame = +1

Query: 547 PPPKGXILFSTXXXGNPXKKXLSKGXQKAXXPPKXRLXGVFP*FPPPXXXSXKXTXI*KV 726
           PPPKG         G P +    +G      PP  +  G  P  PPP       +     
Sbjct: 98  PPPKGTGTPPPPPTGEP-QDLSGEGNASRRPPPPPKGTGSPP--PPPTGEPQDLSGEGNA 154

Query: 727 GNXXXXXXXXXXXXXPPPXHNVXKXXXXGNXPXTPXSPFFPXXXPPPP 870
                          PPP          GN    P  P      PPPP
Sbjct: 155 SRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPP 202



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 26/108 (24%), Positives = 31/108 (28%)
 Frame = +1

Query: 547 PPPKGXILFSTXXXGNPXKKXLSKGXQKAXXPPKXRLXGVFP*FPPPXXXSXKXTXI*KV 726
           PPPKG         G P +   ++G      PP  +  G  P  PPP       +     
Sbjct: 160 PPPKGTGSPPPPPTGEP-QDLSTEGNASRRPPPPPKGTGTPP--PPPTGEPQDLSAEGYA 216

Query: 727 GNXXXXXXXXXXXXXPPPXHNVXKXXXXGNXPXTPXSPFFPXXXPPPP 870
                          PPP          GN    P  P      PPPP
Sbjct: 217 SRRPPPPPKGTGSPTPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPP 264


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +1

Query: 772 PPPXHNVXKXXXXGNXPXTPXSPFFPXXXPPPPLSXXXPP 891
           PPP   +           TP  P  P   PPPP S   PP
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 328


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +1

Query: 772 PPPXHNVXKXXXXGNXPXTPXSPFFPXXXPPPPLSXXXPP 891
           PPP   +           TP  P  P   PPPP S   PP
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPP 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,904,443
Number of Sequences: 27780
Number of extensions: 167690
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)