Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E05
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    95   1e-20
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    29   1.3  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    26   6.9  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
 Frame = +3

Query: 132 CWXHLDXQSYVLKSHATNQETILHLTPEQX-KDK--SHFTDKESGVELELVECQPLLEWL 302
           C+  LD   Y  K+   N   I ++T EQ  KD   S   DK++G E+ELV    L EWL
Sbjct: 319 CFADLDMIRYEFKNSEGNP-VITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWL 377

Query: 303 ANNYKSFGATLEIITDKSQEGSQFVRGFGGIGGLLRYKVDFQSM 434
           A +YK +GA LE ++D+SQEG QFV+GFGGIG ++RY++D   +
Sbjct: 378 AEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSML 421


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +3

Query: 174 HATNQETILHLTPEQXKDKSHFTDKESGVELELVECQPLLEWLANNYKSFGATLEIIT 347
           H   ++  L++  +  ++ + F  K+ G +    +C+PLL+ +A  +K    T  I+T
Sbjct: 31  HVFTRKYDLNINRDSLQELASFVSKKCGSQWRS-QCEPLLDEIAKTWKRVHETQPIVT 87


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 24  YYVAFLSXFTGHRQVFASVSXLHCALSXSXP 116
           Y   FL  F G +  FA +  L CA S   P
Sbjct: 417 YEALFLDAFAGDQSRFARIDELECAWSLVDP 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,657
Number of Sequences: 5004
Number of extensions: 30480
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)