Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E05
         (964 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0830 + 28034179-28035492                                        124   1e-28
01_07_0127 + 41234826-41236136                                        124   1e-28
07_03_1085 - 23851852-23853165                                        120   2e-27
01_07_0218 + 42073425-42073561,42073714-42073743,42073957-420741...    30   2.4  
04_04_0580 + 26361036-26361095,26361190-26361330,26361703-26361885     30   3.2  
02_03_0333 + 17843605-17843661,17843713-17843881,17845606-178457...    29   4.2  

>03_05_0830 + 28034179-28035492
          Length = 437

 Score =  124 bits (299), Expect = 1e-28
 Identities = 56/99 (56%), Positives = 70/99 (70%)
 Frame = +3

Query: 135 WXHLDXQSYVLKSHATNQETILHLTPEQXKDKSHFTDKESGVELELVECQPLLEWLANNY 314
           W +LD   YVLK+ AT +  I HL  EQ  D+S+F D  +  ELE+ +   LLEW AN Y
Sbjct: 324 WENLDVNRYVLKNSATGETAIKHLNKEQEADQSNFRDTSTNAELEVQDKTSLLEWFANEY 383

Query: 315 KSFGATLEIITDKSQEGSQFVRGFGGIGGLLRYKVDFQS 431
           K FG TLE +T+KSQEGSQF RGFGGIGG+LRY++D +S
Sbjct: 384 KKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRS 422


>01_07_0127 + 41234826-41236136
          Length = 436

 Score =  124 bits (298), Expect = 1e-28
 Identities = 54/101 (53%), Positives = 72/101 (71%)
 Frame = +3

Query: 135 WXHLDXQSYVLKSHATNQETILHLTPEQXKDKSHFTDKESGVELELVECQPLLEWLANNY 314
           W +LD   YVLK+  T + T+ HL   Q  D+S+F DK +  ELE++E   LLEW A NY
Sbjct: 324 WENLDINRYVLKNSVTGETTVKHLNKAQETDQSNFRDKATSAELEVIEKTLLLEWFAENY 383

Query: 315 KSFGATLEIITDKSQEGSQFVRGFGGIGGLLRYKVDFQSMQ 437
           + FG +LE +T+KSQEGSQFVRGFGGIGG+LRY+V+  + +
Sbjct: 384 RQFGCSLEFVTNKSQEGSQFVRGFGGIGGILRYQVEINAYE 424


>07_03_1085 - 23851852-23853165
          Length = 437

 Score =  120 bits (289), Expect = 2e-27
 Identities = 54/99 (54%), Positives = 69/99 (69%)
 Frame = +3

Query: 135 WXHLDXQSYVLKSHATNQETILHLTPEQXKDKSHFTDKESGVELELVECQPLLEWLANNY 314
           W +L+   YVLK+ A+ +  I H   EQ  D+S+F D  S  ELE+ E   LLEW AN Y
Sbjct: 324 WENLETNRYVLKNSASGETVIKHFNKEQEADQSNFRDPASNAELEVQEKMSLLEWFANEY 383

Query: 315 KSFGATLEIITDKSQEGSQFVRGFGGIGGLLRYKVDFQS 431
           K FG +LE +T+KSQEGSQF RGFGGIGG+LRY++D +S
Sbjct: 384 KKFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRS 422


>01_07_0218 +
           42073425-42073561,42073714-42073743,42073957-42074137,
           42074742-42074806,42075374-42075545,42076570-42076769,
           42076872-42076944,42077150-42077401
          Length = 369

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 17/91 (18%), Positives = 42/91 (46%)
 Frame = +3

Query: 147 DXQSYVLKSHATNQETILHLTPEQXKDKSHFTDKESGVELELVECQPLLEWLANNYKSFG 326
           + +  +L+   T  E+    +P Q   KS     ++ ++ E  + + L++++  NY+ + 
Sbjct: 185 EWKEIILRRGKTALESEKDQSPHQAVVKSEKDQSQAAMKSEKADTEKLIQFMEANYEKYV 244

Query: 327 ATLEIITDKSQEGSQFVRGFGGIGGLLRYKV 419
           A ++   D      + +  F    G ++YK+
Sbjct: 245 ANVDSFEDFYHAIVELIEKFCEERGQVQYKI 275


>04_04_0580 + 26361036-26361095,26361190-26361330,26361703-26361885
          Length = 127

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 258 VELELVECQPLLEWLANNYKSFGATLEIITDKSQEGSQ 371
           + L+L E  PL EW+    ++ G   +  TD+S EGSQ
Sbjct: 81  LRLDLNE-DPLKEWITRTVEASGVAEDSRTDESSEGSQ 117


>02_03_0333 +
           17843605-17843661,17843713-17843881,17845606-17845723,
           17845725-17846358,17846457-17846526,17847680-17847804,
           17848146-17848270,17848638-17848730,17849714-17849753
          Length = 476

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 195 ILHLTPEQX--KDKSHFTDKESGVELELVECQP 287
           +LH +PE    +D  HF  K+SG  LEL+  +P
Sbjct: 198 LLHESPESILQQDDLHFIQKDSGETLELLSIEP 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,087,005
Number of Sequences: 37544
Number of extensions: 237755
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)