Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E05
         (964 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical...   144   1e-34
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    30   2.8  

>AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical
           protein T05H4.6 protein.
          Length = 443

 Score =  144 bits (348), Expect = 1e-34
 Identities = 62/103 (60%), Positives = 82/103 (79%)
 Frame = +3

Query: 132 CWXHLDXQSYVLKSHATNQETILHLTPEQXKDKSHFTDKESGVELELVECQPLLEWLANN 311
           CW +LD   Y +K+ +  ++ +L+L P++ KDKSHFTD E+G ++E++E  PLLEW ANN
Sbjct: 330 CWENLDIVRYKMKN-SLGEDILLNLRPDEEKDKSHFTDSETGQDMEIIETMPLLEWFANN 388

Query: 312 YKSFGATLEIITDKSQEGSQFVRGFGGIGGLLRYKVDFQSMQL 440
           YK+FGA LEI+TDKSQEG+QFVRGFGGIGGLLRY+VD   + L
Sbjct: 389 YKNFGAALEIVTDKSQEGAQFVRGFGGIGGLLRYRVDLAHVDL 431


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 171 SHATNQETILHLTPEQXKDKSHFTDKESGVELELVECQPLLE 296
           S+A   ET+  ++PE  K K H  DK++    +LV  +  +E
Sbjct: 679 SNAITPETVFDISPELGKSKQHCIDKQAEYSGKLVHLKNHIE 720


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,428,153
Number of Sequences: 27780
Number of extensions: 189342
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)