Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_E03
(918 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 320 2e-86
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 171 3e-41
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 145 2e-33
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 135 1e-30
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 121 2e-26
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 115 2e-24
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 113 5e-24
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 112 1e-23
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 112 1e-23
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 110 4e-23
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 103 8e-21
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 102 1e-20
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 101 2e-20
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 97 4e-19
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 97 6e-19
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 96 1e-18
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 95 2e-18
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 95 2e-18
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 92 2e-17
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 91 4e-17
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 82 2e-14
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 65 2e-09
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 61 4e-08
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 60 8e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 1e-07
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 60 1e-07
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 56 2e-06
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 4e-06
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 54 4e-06
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 54 5e-06
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 52 3e-05
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 50 1e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 49 1e-04
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 49 1e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 49 2e-04
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 49 2e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 48 3e-04
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 48 3e-04
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 47 6e-04
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 47 6e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 0.002
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 45 0.003
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.003
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 44 0.004
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 44 0.004
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 44 0.004
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 44 0.005
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 44 0.007
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.010
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 43 0.013
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.017
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.017
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.029
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 42 0.029
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 42 0.029
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 42 0.029
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.051
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 41 0.051
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.051
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.067
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.067
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 40 0.067
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.089
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.089
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 40 0.089
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 39 0.16
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.27
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 38 0.27
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.36
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.36
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.36
UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;... 38 0.47
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 38 0.47
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.47
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.63
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.63
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 37 0.83
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 37 0.83
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 37 0.83
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 1.1
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 1.4
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 36 1.9
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 3.3
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 3.3
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 4.4
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 4.4
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 4.4
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 5.9
UniRef50_A5AY91 Cluster: Putative uncharacterized protein; n=3; ... 34 5.9
UniRef50_A5AIX8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.9
UniRef50_A1CDG0 Cluster: Pre-mRNA splicing factor, putative; n=1... 34 5.9
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 320 bits (787), Expect = 2e-86
Identities = 152/170 (89%), Positives = 164/170 (96%)
Frame = +2
Query: 146 TVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG 325
T RPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKDP+RLFEG
Sbjct: 15 TPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEG 74
Query: 326 NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 505
NALLRRLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRH
Sbjct: 75 NALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRH 134
Query: 506 IRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 655
IRVRKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +KGQGG
Sbjct: 135 IRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGG 184
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 171 bits (415), Expect = 3e-41
Identities = 85/165 (51%), Positives = 116/165 (70%), Gaps = 1/165 (0%)
Frame = +2
Query: 158 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 337
P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPKRL EG ALL
Sbjct: 18 PYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALL 77
Query: 338 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 517
RRL +G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V
Sbjct: 78 RRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVG 137
Query: 518 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR-PGRVKRKNLRKGQ 649
KQVV++PSF+VR++S I + +P GR KRKN G+
Sbjct: 138 KQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNNHAGK 182
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 145 bits (351), Expect = 2e-33
Identities = 83/150 (55%), Positives = 101/150 (67%), Gaps = 7/150 (4%)
Frame = +2
Query: 227 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNALLRRLVRIGVLDEKQMK------L 385
EVWRVK+TL +IRKA ELL L EKDP+ LFE N LLR+LV G+L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 386 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 565
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSR 159
Query: 566 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 655
KH DF GGG PG VKRKN++KG+GG
Sbjct: 160 KHTDFFRHCLNGGGYPGSVKRKNVKKGRGG 189
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 135 bits (327), Expect = 1e-30
Identities = 70/118 (59%), Positives = 85/118 (72%)
Frame = +2
Query: 155 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 334
RP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P+R+FEG AL
Sbjct: 19 RPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNPRRIFEGEAL 67
Query: 335 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 508
LR + R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 68 LRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 121 bits (292), Expect = 2e-26
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 9/157 (5%)
Frame = +2
Query: 158 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL-FEGNAL 334
PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+ + G +L
Sbjct: 16 PFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSL 73
Query: 335 LRRLVRIGVL------DEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 490
LRRL++ G+L D++++ L+ VL L I +LERRLQ +VF AGLAKS+HHAR+L
Sbjct: 74 LRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLL 133
Query: 491 IRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 601
I R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 134 IGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 115 bits (276), Expect = 2e-24
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Frame = +2
Query: 146 TVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-EEKDPKRLFE 322
T RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L + +FE
Sbjct: 13 TPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFE 72
Query: 323 G--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIR 496
+ L+ + R G+L +D VL LK+ LERRLQT V++ GLA+S AR L+
Sbjct: 73 AKKSELISHMQRAGLLG-PDADIDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVT 131
Query: 497 QRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 598
HI + + V +P ++V I ++ KSPF
Sbjct: 132 HGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 113 bits (273), Expect = 5e-24
Identities = 57/145 (39%), Positives = 91/145 (62%)
Frame = +2
Query: 158 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 337
P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K K + +L
Sbjct: 20 PYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLEKIPSQSYGIL 79
Query: 338 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 517
+ ++ L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+
Sbjct: 80 WFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVK 139
Query: 518 KQVVNIPSFIVRLDSGKHIDFSLKS 592
Q+VN PSF+VR D+ I FSL S
Sbjct: 140 NQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 112 bits (270), Expect = 1e-23
Identities = 62/162 (38%), Positives = 96/162 (59%)
Frame = +2
Query: 158 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 337
P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L + R L+
Sbjct: 17 PWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLI 74
Query: 338 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 517
++L R+G++++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI +
Sbjct: 75 QKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIG 134
Query: 518 KQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 643
+ V P +IV IDF SPF P + +N+++
Sbjct: 135 GRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENVQQ 176
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 112 bits (270), Expect = 1e-23
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 1/167 (0%)
Frame = +2
Query: 128 FKDVRDTVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 307
FK +T P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 308 KRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 487
+ E L L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQ 125
Query: 488 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGRPGRVK 625
LI HI V +VV PS++V ++ I ++ SPF P R K
Sbjct: 126 LIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 110 bits (265), Expect = 4e-23
Identities = 62/153 (40%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Frame = +2
Query: 146 TVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL--- 316
T RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+ ++
Sbjct: 13 TPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVE 72
Query: 317 FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIR 496
+ + L+ L R G+L E +D VL LK+E L+RRLQTQV++ G A+S AR I
Sbjct: 73 RKKDELIGSLQRSGMLSE-NADIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFIT 131
Query: 497 QRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 595
HI + + V IP + V + I ++ SP
Sbjct: 132 HGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 103 bits (246), Expect = 8e-21
Identities = 56/132 (42%), Positives = 82/132 (62%), Gaps = 2/132 (1%)
Frame = +2
Query: 161 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFEGNAL 334
+ K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 20 WNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PF 75
Query: 335 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 514
+L ++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V
Sbjct: 76 KEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAV 135
Query: 515 RKQVVNIPSFIV 550
+ V P F+V
Sbjct: 136 AGRRVTSPGFLV 147
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 102 bits (245), Expect = 1e-20
Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 5/163 (3%)
Frame = +2
Query: 122 GIFKDVRDTVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE- 298
G K + DT P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 5 GQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSA 64
Query: 299 ----KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAK 466
+D + + ++++L +G+L E KL+ VL LK++D +ERRLQT +++ G A
Sbjct: 65 GNLPEDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFAN 123
Query: 467 SIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 595
SI AR I HI + + + +P ++V + + + SP
Sbjct: 124 SIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 101 bits (243), Expect = 2e-20
Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Frame = +2
Query: 146 TVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLEEKDPKRLFE 322
T P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L D +
Sbjct: 13 TPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQKQ 72
Query: 323 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 502
+++RL R +L +K LD VL L +E+ L+RRLQT VFK LA S AR LI
Sbjct: 73 LERMIKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHG 131
Query: 503 HIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 595
HI V + V +P +V I + SP
Sbjct: 132 HITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 97.5 bits (232), Expect = 4e-19
Identities = 58/147 (39%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
Frame = +2
Query: 158 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNA-L 334
P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 14 PWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEKERF 72
Query: 335 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 514
L +L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I HI V
Sbjct: 73 LTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMV 131
Query: 515 RKQVVNIPSFIVRLDSGKHIDFSLKSP 595
+VV+ PS++V+ + I+F SP
Sbjct: 132 NGEVVDAPSYLVKKEEEDKIEFVPFSP 158
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 97.1 bits (231), Expect = 6e-19
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Frame = +2
Query: 143 DTVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE-------EK 301
+T P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL E
Sbjct: 12 ETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGEL 71
Query: 302 DPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHA 481
+ + +L +L+R G++ + +D +L LK E+ LERRLQTQV + GLA+++ A
Sbjct: 72 EGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQA 130
Query: 482 RILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 595
R I HI + + IP +V + HI + SP
Sbjct: 131 RQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 95.9 bits (228), Expect = 1e-18
Identities = 56/151 (37%), Positives = 83/151 (54%)
Frame = +2
Query: 143 DTVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE 322
DT P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++ ++ E
Sbjct: 12 DTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--E 69
Query: 323 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 502
L L R G+L ++ LD VL L +E LERRLQT VF+ GLA + AR I
Sbjct: 70 AVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHG 129
Query: 503 HIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 595
HI V + +N PS++V L I + SP
Sbjct: 130 HIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 95.5 bits (227), Expect = 2e-18
Identities = 57/166 (34%), Positives = 94/166 (56%)
Frame = -3
Query: 652 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMM 473
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S ++
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVV 69
Query: 472 DGLRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQXXXXXXX 293
+ L Q L LQ++ QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQ
Sbjct: 70 NRLGQTQLVDLGLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFV 129
Query: 292 XXXXXXXXXXXXXERVFDAPYFTLVAETVLSDDLQLLVKTCLFKRT 155
+ ++ F+LV +TV + LQ V+T F R+
Sbjct: 130 SGQQISGGSSDLRQLERNSVNFSLVLQTVFTSQLQFGVQTSGFVRS 175
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 95.1 bits (226), Expect = 2e-18
Identities = 51/146 (34%), Positives = 83/146 (56%)
Frame = +2
Query: 143 DTVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE 322
DT P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++ + R +
Sbjct: 12 DTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADK 69
Query: 323 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 502
LL LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ +
Sbjct: 70 EKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHG 128
Query: 503 HIRVRKQVVNIPSFIVRLDSGKHIDF 580
HI + + +N P +V ++IDF
Sbjct: 129 HITLNGKKINAPGHLVEKADEENIDF 154
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 91.9 bits (218), Expect = 2e-17
Identities = 52/146 (35%), Positives = 79/146 (54%)
Frame = +2
Query: 143 DTVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFE 322
+T P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 12 ETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVS 66
Query: 323 GNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 502
G + RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR +
Sbjct: 67 GEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHG 125
Query: 503 HIRVRKQVVNIPSFIVRLDSGKHIDF 580
H+ V V PS+ V + + F
Sbjct: 126 HVTVDGSRVTEPSYTVPVSEENTLAF 151
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 91.1 bits (216), Expect = 4e-17
Identities = 57/148 (38%), Positives = 82/148 (55%)
Frame = +2
Query: 155 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 334
RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L ++ +R + L
Sbjct: 16 RPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVL 73
Query: 335 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 514
LR L RIG++ K LD VL L++ D L RRLQT V K + + AR + HI +
Sbjct: 74 LRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITI 132
Query: 515 RKQVVNIPSFIVRLDSGKHIDFSLKSPF 598
+VV IPS+ V ++ I + S F
Sbjct: 133 SDRVVTIPSYTVYVEEEGDIKLTGGSAF 160
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 82.2 bits (194), Expect = 2e-14
Identities = 49/127 (38%), Positives = 73/127 (57%)
Frame = +2
Query: 170 ARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLV 349
AR+ + +I EYGL N E+W+V+ ++R+R R LL+ + ++ R+V
Sbjct: 21 ARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSHDT----SDKIIARMV 76
Query: 350 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 529
+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI I V + V
Sbjct: 77 KFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRV 135
Query: 530 NIPSFIV 550
+IP ++V
Sbjct: 136 SIPGYMV 142
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 65.3 bits (152), Expect = 2e-09
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = +2
Query: 512 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 658
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN + GGG
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGG 75
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 60.9 bits (141), Expect = 4e-08
Identities = 37/118 (31%), Positives = 58/118 (49%)
Frame = +2
Query: 197 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 376
I +YGLR++ E + + ++RK A L L+E DP R L+ RL +GV+ K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 377 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 550
KL + + F ERRL + + + S A + H+R+ +VV PS I+
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTII 147
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 60.1 bits (139), Expect = 8e-08
Identities = 33/61 (54%), Positives = 37/61 (60%)
Frame = -1
Query: 597 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCVCRRRSK 418
+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T VC+RRSK
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSK 117
Query: 417 K 415
K
Sbjct: 118 K 118
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 1e-07
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +2
Query: 230 VWRVKYTLARIRKAARELLTLEEKDPKRLF 319
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 59.7 bits (138), Expect = 1e-07
Identities = 36/122 (29%), Positives = 61/122 (50%)
Frame = +2
Query: 185 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVL 364
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
Query: 365 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
+ L+ + F RRL T + K +A+ + A + Q H+RV VV P+F
Sbjct: 90 PTRG-SLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 545 IV 550
+V
Sbjct: 149 LV 150
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 55.6 bits (128), Expect = 2e-06
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +2
Query: 536 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 661
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+ K GGA
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGA 68
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 4e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +2
Query: 365 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 472
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 54.4 bits (125), Expect = 4e-06
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +2
Query: 185 ELKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 361
E+KI+ Y ++ KRE + L+R IR+ ++ ++ K P R LL +L +G+
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRTEMSGLLLEKLYVLGL 87
Query: 362 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 541
+ K L+ + F RRL + + +++++ HA +I H+RV VV P+
Sbjct: 88 IPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPA 146
Query: 542 FIV 550
F+V
Sbjct: 147 FLV 149
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 54.0 bits (124), Expect = 5e-06
Identities = 32/123 (26%), Positives = 59/123 (47%)
Frame = +2
Query: 182 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 361
++ +++ Y ++N+ + + IR+ A +L L DP R LL +L +GV
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 362 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 541
L K D + + RRL + + +A++I A I Q H+RV ++N P+
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPA 147
Query: 542 FIV 550
++V
Sbjct: 148 YLV 150
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 51.6 bits (118), Expect = 3e-05
Identities = 34/118 (28%), Positives = 56/118 (47%)
Frame = +2
Query: 197 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 376
+ +YG+ ++RE+ + T+ +IR L L + + R+ L R L +GV+D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 377 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 550
LD + L L RRL + K + + I ++Q H+RV VV P+ V
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVVNPALHV 149
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 49.6 bits (113), Expect = 1e-04
Identities = 29/123 (23%), Positives = 60/123 (48%)
Frame = +2
Query: 182 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 361
++++ IG +GL+ K E +A+ + +E+ L ++DP + + L +L +GV
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 362 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 541
+D KQ ++ + F RR + K A+ + A L+ H+R+ + + P+
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETIQDPA 146
Query: 542 FIV 550
I+
Sbjct: 147 LII 149
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = +2
Query: 290 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 469
L+EK R F N ++ V K +G + LERRL +++AG S
Sbjct: 91 LKEKQKLRKFYANVTEKQFYNYYV---KAKSFKGKIGDNLIKMLERRLDIIIYRAGFVNS 147
Query: 470 IHHARILIRQRHIRVRKQVVNIPSFIVR 553
I+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 148 IYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 49.2 bits (112), Expect = 1e-04
Identities = 37/103 (35%), Positives = 54/103 (52%)
Frame = +2
Query: 284 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLA 463
+ L+EK R G L R +R +L+ + K G + LERRL VF+AG A
Sbjct: 51 IKLQEKQKLRFNYG--LSERQLRHLMLNAR--KSTEPTGETLLQLLERRLDNVVFRAGFA 106
Query: 464 KSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 592
++ AR L+ RH+R+ + VNIPS +RL+ G I +S
Sbjct: 107 PTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEITIKPES 147
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 48.8 bits (111), Expect = 2e-04
Identities = 32/96 (33%), Positives = 49/96 (51%)
Frame = +2
Query: 257 RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQ 436
R RK + + L+EK + G +L R R + + K + G + F+E RL
Sbjct: 41 RRRKQSEYGIQLQEKQKAKYTYG--ILERQFR-NIFHQASRKKG-ITGENLLKFIEARLD 96
Query: 437 TQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 97 NTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 48.8 bits (111), Expect = 2e-04
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Frame = +2
Query: 182 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 361
+E KI+ Y +++ E + + RI K EL L E D R+ + L+ +L +
Sbjct: 27 RETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKM 86
Query: 362 ----LDEKQMKLDYVLG-------LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 508
L QM L V G L F RRL T + + + + A I Q HI
Sbjct: 87 MYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Query: 509 RVRKQVVNIPSFIVRLDSGKHIDFS 583
RV VVNIP++ V + HI ++
Sbjct: 147 RVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 48.4 bits (110), Expect = 3e-04
Identities = 33/97 (34%), Positives = 51/97 (52%)
Frame = +2
Query: 266 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQV 445
K E T + K F N + ++ +I +E KL V GL + ++LERRL+ V
Sbjct: 38 KKPTEYATQLREKQKAKFIYNVMEKQFRKI--YEEAARKLG-VTGLTLIEYLERRLENVV 94
Query: 446 FKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 556
++ G AK+ AR ++ HI V + VNI SF V++
Sbjct: 95 YRLGFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKV 131
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 48.0 bits (109), Expect = 3e-04
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = +2
Query: 239 VKYT-LAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIE 412
+KY L+R +R A ++ L+ KDP R + +L++L +G++ KQ L +
Sbjct: 1 MKYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSAS 59
Query: 413 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 550
F RRL + K +A+++ A ++ HIRV ++V P+F+V
Sbjct: 60 SFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPELVLDPAFLV 105
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 47.2 bits (107), Expect = 6e-04
Identities = 31/97 (31%), Positives = 50/97 (51%)
Frame = +2
Query: 263 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 442
RK + L L EK + G +L + R KQM + + G + LE RL
Sbjct: 21 RKMSEYGLQLREKQKAKFIYG--VLEKPFRNYYAKAKQM--EGMTGENLMRILESRLDNV 76
Query: 443 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 553
+F+ GLA++ AR ++ +H+ V + VNIPS++V+
Sbjct: 77 IFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVK 113
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 47.2 bits (107), Expect = 6e-04
Identities = 38/118 (32%), Positives = 55/118 (46%)
Frame = +2
Query: 254 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 433
AR +K + + L EK + G +L R+ EK V G + LERRL
Sbjct: 46 ARFKKVSDYAVQLREKQKVKSMYG--VLEAQFRLTF--EKAEAQKGVAGENLLILLERRL 101
Query: 434 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGG 607
VF+AG A S AR ++R +HI + + V+IPS+ ++ G I KS G
Sbjct: 102 DNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDVISLREKSRANAG 157
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 0.002
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +2
Query: 371 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 550
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 551 R 553
+
Sbjct: 152 K 152
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 44.8 bits (101), Expect = 0.003
Identities = 30/119 (25%), Positives = 54/119 (45%)
Frame = +2
Query: 194 IIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEK 373
I+ + + ++ E + + +RK + L L + D R+ + RL +GV+
Sbjct: 32 IMARFHIHDESEFEAYEKAVLNLRKLSFLLQKLPKDDAFRMVLTKRICDRLYDLGVIILP 91
Query: 374 QMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 550
+ L + + DF RRL V + + A LI+Q HI+V V+ P++IV
Sbjct: 92 EKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.003
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +2
Query: 392 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 571
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 572 IDFSLKS 592
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 44.4 bits (100), Expect = 0.004
Identities = 36/101 (35%), Positives = 48/101 (47%)
Frame = +2
Query: 254 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 433
AR R+ + L L EK R G L R+ RI EK + G + LERRL
Sbjct: 41 ARRRQVSDYGLQLLEKQKARYVYG-VLERQFRRIF---EKAQRFPGETGAYLFILLERRL 96
Query: 434 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 556
V++ G A + AR L+ HI V + NIPS+ VR+
Sbjct: 97 DNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYTVRV 137
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 44.4 bits (100), Expect = 0.004
Identities = 30/94 (31%), Positives = 48/94 (51%)
Frame = +2
Query: 263 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 442
RK ++ + LEEK R G + L + + + + VL L++ LE RL
Sbjct: 35 RKISQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVL-LQL---LEMRLDNT 90
Query: 443 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
+F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 91 IFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 44.4 bits (100), Expect = 0.004
Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +2
Query: 173 RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG--NALLRRL 346
RL EL +G+ G +R ++ L R RK + L LEEK R G RRL
Sbjct: 15 RLLTELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYGLREEQFRRL 73
Query: 347 VRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 526
+ +K ++V L + LE+RL VF+ G A SI AR L+ + V +
Sbjct: 74 INKA---KKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKK 128
Query: 527 VNIPSFIVRL 556
VNI S I+++
Sbjct: 129 VNIGSQIIKV 138
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 44.0 bits (99), Expect = 0.005
Identities = 28/131 (21%), Positives = 61/131 (46%)
Frame = +2
Query: 191 KIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDE 370
+++G Y L N E + + +I++ L + +D R+ + R+ ++G+++
Sbjct: 31 QVVGIYCLDNSEEYHQYNRLVGKIQRFTNTLRQMGPEDKVRIDLTKQFVDRVYKLGIIET 90
Query: 371 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 550
Q L + + +RRL + + I A L+RQ H+R+ VV P+ +V
Sbjct: 91 PQ--LSECEKINVVAICKRRLPVIMVNLKFCQRISEADKLVRQGHVRIGPDVVTNPATLV 148
Query: 551 RLDSGKHIDFS 583
+ +I+++
Sbjct: 149 SKEMEDYINWA 159
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 43.6 bits (98), Expect = 0.007
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Frame = +2
Query: 221 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 397
KRE + + TLA + R+ A + L E DP R +L + G++ L+ +
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98
Query: 398 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 577
+ F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I
Sbjct: 99 KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMIT 158
Query: 578 FSLKS 592
++ S
Sbjct: 159 WTKAS 163
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 43.2 bits (97), Expect = 0.010
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +2
Query: 398 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 577
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 578 FSLKS 592
KS
Sbjct: 147 IKEKS 151
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 42.7 bits (96), Expect = 0.013
Identities = 33/97 (34%), Positives = 48/97 (49%)
Frame = +2
Query: 254 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 433
A +K + + LEEK RL G + R+++R K + GL + LE RL
Sbjct: 39 AERKKKSEYAIRLEEKQKVRLNYGVSE-RQMLRYM---RKARRSKGSTGLALLQMLEMRL 94
Query: 434 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 95 DCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.017
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +2
Query: 419 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 592
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.017
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +2
Query: 368 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 41.5 bits (93), Expect = 0.029
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +2
Query: 368 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 547
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 548 VR 553
VR
Sbjct: 137 VR 138
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 41.5 bits (93), Expect = 0.029
Identities = 31/93 (33%), Positives = 48/93 (51%)
Frame = +2
Query: 266 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQV 445
K +R + LEEK R G + L + + + VL L++ LE RL +
Sbjct: 26 KKSRYRIRLEEKQKVRFHYGLTDRQLLQYVRIARRAKGSTGQVL-LQL---LEMRLDNIL 81
Query: 446 FKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 82 FRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 41.5 bits (93), Expect = 0.029
Identities = 28/98 (28%), Positives = 47/98 (47%)
Frame = +2
Query: 254 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 433
+R K ++ + LEEK R G + L + + K + +G + LE L
Sbjct: 157 SRSGKRSQYRIRLEEKQKLRFHYGLTERQLLNYVHIA----RKAKWAIGRVLLQLLEMHL 212
Query: 434 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 547
+F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 213 DNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 41.5 bits (93), Expect = 0.029
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 128 FKDVRDTVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 286
FK+ R + + F LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 123 FKESRSSYGKGF----LDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 40.7 bits (91), Expect = 0.051
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +2
Query: 362 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 541
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 542 F 544
+
Sbjct: 95 Y 95
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 40.7 bits (91), Expect = 0.051
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 497 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 640
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLK 182
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.051
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +2
Query: 398 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 577
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 578 FSLKS 592
KS
Sbjct: 142 LRDKS 146
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 40.3 bits (90), Expect = 0.067
Identities = 36/117 (30%), Positives = 55/117 (47%)
Frame = +2
Query: 203 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMK 382
E G +K+E R R RK + + L EK + G +L + G + K K
Sbjct: 21 ELGYSSKKESIRQP---KRRRKESEYGMQLREKQKVKFIYG--VLEKQFH-GYFN-KARK 73
Query: 383 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 553
++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V+
Sbjct: 74 MNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRVK 130
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.067
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +2
Query: 392 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 553
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 40.3 bits (90), Expect = 0.067
Identities = 31/121 (25%), Positives = 56/121 (46%)
Frame = +2
Query: 197 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 376
I +Y L ++ + R + IR+ L L R+ +L +L +G+++EK
Sbjct: 79 ITKYHLEDREDYRRYLRLVGLIRQLLTHLRYLPADSKIRIQITQQILDKLYAMGLINEK- 137
Query: 377 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 556
+ L V + +E F +RRL T + +A + A + H+RV + P+F+V
Sbjct: 138 LGLAEVDKVGVEVFCKRRLPTVLRDLNMAPNCKIAADFVHHGHVRVGTSQIRDPAFLVPR 197
Query: 557 D 559
D
Sbjct: 198 D 198
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.089
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 413 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 556
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.089
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 398 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 577
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 578 F 580
F
Sbjct: 147 F 147
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 39.9 bits (89), Expect = 0.089
Identities = 30/97 (30%), Positives = 50/97 (51%)
Frame = +2
Query: 254 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRL 433
+R K ++ + LEEK R G + L + + + + VL L++ LE RL
Sbjct: 36 SRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGKAKGSTGQVL-LQL---LEMRL 91
Query: 434 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
+F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 92 DNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.1 bits (87), Expect = 0.16
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +2
Query: 362 LDEKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 526
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 527 VNIPSFIV 550
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 38.3 bits (85), Expect = 0.27
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 554 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 661
+DS KH DFSL SP G R +VKRK L+ K GGA
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 38.3 bits (85), Expect = 0.27
Identities = 32/138 (23%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Frame = +2
Query: 164 EKARLDQELKIIGEYGLRNKREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLR 340
++ + DQ+LK Y + + + + + + +I + + + K + F N L
Sbjct: 54 KRGKRDQQLKTT--YTKKKLKRILSLLFRIGGKIYRKKIKKKKINLKKQQEPFTQNLTLH 111
Query: 341 RLVRIGVLDEK--QMKLDY--VLGLK--IEDFLERRLQTQVFKAGLAKSIHHARILIRQR 502
RL R L+ K Q KL Y G + I LE+R+ + ++G +S++ AR +I +
Sbjct: 112 RLFRKFYLNLKLKQFKLLYKKYKGNEKVIIQQLEKRVDMVLLRSGFVRSLYEARQIINHK 171
Query: 503 HIRVRKQVVNIPSFIVRL 556
H+ V ++ ++P +++ +
Sbjct: 172 HLLVNGKIASLPGYMINV 189
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.36
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +2
Query: 419 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 553
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.36
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 368 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 547
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 548 V 550
V
Sbjct: 136 V 136
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.36
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 398 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;
n=21; Eukaryota|Rep: Putative 40S ribosomal protein
S4-like - Pneumocystis carinii
Length = 169
Score = 37.5 bits (83), Expect = 0.47
Identities = 24/123 (19%), Positives = 52/123 (42%)
Frame = +2
Query: 182 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 361
+++ +I Y + + + ++ + + A +L LE D LL +L + +
Sbjct: 28 RDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMAL 87
Query: 362 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 541
L D L + F RRL + + + +++ + + H+RV +V+ P+
Sbjct: 88 LTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPA 147
Query: 542 FIV 550
F V
Sbjct: 148 FFV 150
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 37.5 bits (83), Expect = 0.47
Identities = 31/112 (27%), Positives = 54/112 (48%)
Frame = +2
Query: 218 NKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 397
N+RE ++ R K + L L K + + G+ ++ RI + +++K D
Sbjct: 28 NRREYGPGQHGQRRKGKMSDFGLQLRAKQKLKGYYGDLTEKQFRRI-YGEAERVKGD--T 84
Query: 398 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 553
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.47
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 380 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 559
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 560 S 562
S
Sbjct: 142 S 142
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.63
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 419 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 553
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.63
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +2
Query: 392 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 553
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 36.7 bits (81), Expect = 0.83
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +2
Query: 290 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKS 469
L++++ ++ +L + R G DE + G ++ LE RL V++ G A S
Sbjct: 55 LQKREKQKCARIYGVLEKQFR-GYYDEANRRAGKT-GDELLKILESRLDNVVYRGGFAPS 112
Query: 470 IHHARILIRQRHIRVRKQVVNIPSF 544
AR +R H++V + V+IPS+
Sbjct: 113 RDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.7 bits (81), Expect = 0.83
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +2
Query: 338 RRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 517
R+LVR V K++K G + LE RL VF+ +A +I AR LI HI +
Sbjct: 85 RQLVRY-VQQAKKIKGS--TGRVLLRLLEMRLDNIVFRLHMAPTIKAARQLISHGHILIN 141
Query: 518 KQVVNIPSF 544
K+ V IPS+
Sbjct: 142 KKKVTIPSY 150
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 36.7 bits (81), Expect = 0.83
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +2
Query: 257 RIRKAARELLTLEEKDPKRLFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERR 430
+ RK + + L+EK + + G N+ L R R ++ K GL + LE R
Sbjct: 39 KTRKLSEFAVQLQEKQKLQYYYGITNSQLARYFR----QARRSKSS--TGLALLTMLETR 92
Query: 431 LQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
L V++AG A ++ AR L+ H++V + V I S+
Sbjct: 93 LDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 1.1
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +2
Query: 419 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 550
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 1.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 533 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 429
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 35.5 bits (78), Expect = 1.9
Identities = 36/125 (28%), Positives = 56/125 (44%)
Frame = +2
Query: 218 NKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVL 397
N+RE ++ R K + L L+ K + + G+ ++ R D ++K D
Sbjct: 28 NRREYGPGQHGQRRRSKISDYGLQLKAKQKLKGYYGDVTEKQFRR-SYDDASKLKGD--T 84
Query: 398 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 577
+ LERRL V++A A +I AR L+ HIRV NI S R++ G I
Sbjct: 85 SQNLIGILERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEIS 142
Query: 578 FSLKS 592
K+
Sbjct: 143 LGSKA 147
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 3.3
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +2
Query: 398 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 544
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 3.3
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 401 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 580
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 581 S 583
+
Sbjct: 135 A 135
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 4.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 460 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 555
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 34.3 bits (75), Expect = 4.4
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 164 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 343
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.3 bits (75), Expect = 4.4
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 419 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 580
+E+RL ++++G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 5.9
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +2
Query: 407 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 568
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_A5AY91 Cluster: Putative uncharacterized protein; n=3; Vitis
vinifera|Rep: Putative uncharacterized protein - Vitis
vinifera (Grape)
Length = 1162
Score = 33.9 bits (74), Expect = 5.9
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Frame = -1
Query: 237 RHTSRLLRRPYSPMI---FNSWSR-------RAFSKGRXTVS-RTSLKIPTGTLLFTILA 91
RH + LR PY P+I F WS R S+G T S T ++P+G LL +L
Sbjct: 821 RHIAEALRIPYEPVIQADFREWSSFSQSDMVRILSRGTSTASVLTRRELPSGMLLIDVLL 880
Query: 90 SSHALLADKN*KRRPKIL 37
++ +RR IL
Sbjct: 881 RANLFPLQHKVQRRGAIL 898
>UniRef50_A5AIX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 514
Score = 33.9 bits (74), Expect = 5.9
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Frame = -1
Query: 237 RHTSRLLRRPYSPMI---FNSWSR-------RAFSKGRXTVS-RTSLKIPTGTLLFTILA 91
RH + LR PY P+I F WS R S+G T S T ++P+G LL +L
Sbjct: 200 RHIAEALRIPYEPVIQADFREWSSFSQSDMVRILSRGTSTASVLTRRELPSGMLLIDVLL 259
Query: 90 SSHALLADKN*KRRPKIL 37
++ +RR IL
Sbjct: 260 RANLFPLQHKVQRRGAIL 277
>UniRef50_A1CDG0 Cluster: Pre-mRNA splicing factor, putative; n=1;
Aspergillus clavatus|Rep: Pre-mRNA splicing factor,
putative - Aspergillus clavatus
Length = 870
Score = 33.9 bits (74), Expect = 5.9
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 241 DAPYFTLVAETVLSDDLQLLVKTCLFKRTXDGVT--YVFENTDWYSVVHHLGE 89
DAP F LV E + D +LLV T RT GV +F+ D Y V + +
Sbjct: 627 DAPTFGLVQEQLAHDPFRLLVATIFLNRTRGGVALPVLFKVFDQYPTVEEMSK 679
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,153,542
Number of Sequences: 1657284
Number of extensions: 14056985
Number of successful extensions: 40433
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 38965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40400
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84031265255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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