Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_E03
(918 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 284 1e-77
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 283 2e-77
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 57 3e-09
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 31 0.23
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.92
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 4.9
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 26 6.5
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 6.5
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 26 6.5
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S... 26 6.5
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 284 bits (696), Expect = 1e-77
Identities = 131/168 (77%), Positives = 150/168 (89%)
Frame = +2
Query: 155 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 334
RPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17 RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76
Query: 335 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 514
+RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV
Sbjct: 77 IRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRV 136
Query: 515 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 658
KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR Q GG
Sbjct: 137 GKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 283 bits (694), Expect = 2e-77
Identities = 130/167 (77%), Positives = 150/167 (89%)
Frame = +2
Query: 155 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 334
RPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17 RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76
Query: 335 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 514
+RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV
Sbjct: 77 IRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRV 136
Query: 515 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG 655
KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR +GG
Sbjct: 137 GKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGG 183
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 57.2 bits (132), Expect = 3e-09
Identities = 32/123 (26%), Positives = 57/123 (46%)
Frame = +2
Query: 182 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 361
+++ ++ Y + + E + + R+ A L L+ DP RL N LL +L +G+
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 362 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 541
L K D + RRL + K +++ + A LI Q H+RV V+ P+
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147
Query: 542 FIV 550
++V
Sbjct: 148 YLV 150
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 31.1 bits (67), Expect = 0.23
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 688 FFKIANSSQRSATLSLAEVLPLDTSRTTSTEWRFQRE 578
FFK AN++Q S T +VLPL EWR ++
Sbjct: 1127 FFKFANANQVSKTKKNLKVLPLYNRFEKPDEWRISKQ 1163
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.92
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 406 D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 537
D GLLGA+S GVQS PG P P + P S P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 377 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 508
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 556 GLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGWR 657
G + A +L ++S W+ +W +E++ WR
Sbjct: 383 GRYIAQRILGDLSEEWKDAWRWREDDKASELKWR 416
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 6.5
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +2
Query: 89 LAKMVNNRVPVGIFKDVRDTVXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRK 268
L K RV +F VR T R QELK + L +K + +R YT+ RK
Sbjct: 544 LIKFAEKRVRTIVFCRVRKTCESLMRLVR--QELKTKQKGDLLSKIQSYRAGYTVQERRK 601
Query: 269 AAREL 283
E+
Sbjct: 602 IESEM 606
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 6.5
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -3
Query: 682 KIANSSQRSATLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLL 518
KI N + ATL EV T+RTT E +V L++ A+ K W + LL
Sbjct: 149 KINNLGAKVATLFTFEVTHFITTRTTDPEMCQPNDVLYLSKT-ANMKIWLLDKLL 202
>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 176 DVPFQKDXRRCHVRL*KYRLVLCCSPSWRA 87
D F R+ HVRL Y+ V C SP W A
Sbjct: 39 DYAFSMHLRK-HVRLPNYKSVQCRSPWWIA 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,453
Number of Sequences: 5004
Number of extensions: 54914
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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