Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E02
         (950 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48615-1|CAA88531.1|  953|Homo sapiens serine/threonine kinase w...    33   1.2  
X90846-1|CAA62351.1|  954|Homo sapiens mixed lineage kinase 2 pr...    33   1.2  
BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        32   3.5  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        32   3.5  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       32   3.5  
AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens ...    31   6.2  
AC009228-2|AAX93123.1|   94|Homo sapiens unknown protein.              31   6.2  

>Z48615-1|CAA88531.1|  953|Homo sapiens serine/threonine kinase with
           SH3 domain, leucine zipper domain and proline rich
           protein.
          Length = 953

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = -1

Query: 698 ERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 519
           ER  G+    GS+Q S+     G++P    +  GFA+ +   +F +A  GG +   +P +
Sbjct: 573 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 630

Query: 518 RPFYGSWP 495
            P Y S P
Sbjct: 631 TPSYLSVP 638


>X90846-1|CAA62351.1|  954|Homo sapiens mixed lineage kinase 2
           protein.
          Length = 954

 Score = 33.5 bits (73), Expect = 1.2
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = -1

Query: 698 ERRTGIR*AAGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPAT 519
           ER  G+    GS+Q S+     G++P    +  GFA+ +   +F +A  GG +   +P +
Sbjct: 574 ERLKGL--GEGSKQWSSSAPNLGKSPKHTPIAPGFASLNEMEEFAEAEDGGSSVPPSPYS 631

Query: 518 RPFYGSWP 495
            P Y S P
Sbjct: 632 TPSYLSVP 639


>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 700 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 572
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 700 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 572
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.9 bits (69), Expect = 3.5
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 700 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 572
           EKG +VSGKR+GRN  A   ++      +  +C  SP  T AS
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44


>AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35392 fis, clone SKNSH2000716. ).
          Length = 149

 Score = 31.1 bits (67), Expect = 6.2
 Identities = 20/39 (51%), Positives = 20/39 (51%)
 Frame = -1

Query: 557 RQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPPDSV 441
           RQ  G  G   A R F  S P  GLL  CS LR  PDSV
Sbjct: 69  RQHFGIPGYPEAARDFSSS-PAPGLLTLCSRLRAKPDSV 106


>AC009228-2|AAX93123.1|   94|Homo sapiens unknown protein.
          Length = 94

 Score = 31.1 bits (67), Expect = 6.2
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -1

Query: 815 SSDRSKQCXGWHTASWSERLHRTEILQREL*EAPRFPKGERRTGIR*AAGSEQES 651
           + DRS +   WH   W E+  R +   R   E PR  +GE + G+R A  S Q+S
Sbjct: 22  AQDRSIRSLFWHLLDWGEQRARQQARGRRQKETPR--RGEAQ-GLRKADSSLQKS 73


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,591,864
Number of Sequences: 237096
Number of extensions: 2401006
Number of successful extensions: 11661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11659
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12547615372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)