Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E01
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612...    32   0.54 
01_05_0770 - 25052100-25052525,25052718-25053042,25053220-250534...    31   1.2  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    31   1.6  
07_01_0253 + 1888831-1889399,1890121-1890526,1890980-1891195,189...    29   3.8  
09_02_0386 - 8371631-8372125,8373696-8374139                           29   6.6  
06_03_0714 - 23814826-23814997,23815080-23815164,23815680-238157...    29   6.6  
01_05_0303 + 20647654-20647830,20647981-20648067,20648549-206487...    29   6.6  
10_08_0793 - 20614583-20614897,20615417-20615660,20617713-206178...    28   8.7  

>01_05_0736 -
           24760576-24760690,24760885-24761108,24761188-24761248,
           24761909-24763992
          Length = 827

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 476 IRQLAVLLLGKQQIRMQDRPRICRLVQPPQHHRHSVHLPHKLLPQHSVP 622
           ++Q  V LL K     +   R C++V+PP+ HR +      LLP++  P
Sbjct: 33  LKQDPVELLRKLDELREQITRTCQIVEPPREHRRAGRRALSLLPENPEP 81


>01_05_0770 -
           25052100-25052525,25052718-25053042,25053220-25053464,
           25053582-25054061
          Length = 491

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 613 MLGQQLVWQVYRMPVVLWW 557
           +LG  L+WQV+R+ V LWW
Sbjct: 5   LLGLALLWQVHRLLVRLWW 23


>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 554  QPPQHHRHSVHLPHKLLPQHSVPVR---IQVLASGSRHQ 661
            +PP HH H  H PH  +   + PV+   I +  S   H+
Sbjct: 942  EPPHHHNHCCHEPHDQVKNDTHPVQEHSISIEESSDHHE 980


>07_01_0253 +
           1888831-1889399,1890121-1890526,1890980-1891195,
           1891441-1891548,1892085-1892359,1892462-1892714
          Length = 608

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 557 PPQHHRHSVHLPHKLLPQHSVPVRIQVLASGSRHQRQ 667
           PP HHR  +HL H   P+ S P R+++ A+ +  + Q
Sbjct: 7   PPSHHRLHLHL-HLHTPKPSPPRRLRLAAAAAASRLQ 42


>09_02_0386 - 8371631-8372125,8373696-8374139
          Length = 312

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 404 DGDENGEGAAFVVLAPNAKLPNTGALVVGLVKLNVALFSVLDPPNNGFEASPL 246
           DGD  GEG  +++LA     P   A  + L      LF++   P  G  ++ L
Sbjct: 183 DGDLGGEGDRWLLLARTPSKPTRLATAIELAAPPPILFAIATLPGRGASSTSL 235


>06_03_0714 -
           23814826-23814997,23815080-23815164,23815680-23815791,
           23817203-23817304,23817375-23817447,23817918-23817997,
           23818076-23818267,23818945-23819064,23819157-23819244,
           23819319-23819353,23819447-23819518,23819860-23819931,
           23820054-23821189,23822011-23822362
          Length = 896

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 518 RMQDRPRICRLVQPPQHHRHSVHLPHKLLPQHSVPVRIQVLASGSRHQRQLALVFQHLHL 697
           ++Q+R ++C+     Q  R+   L  K+  Q  VP+    L + S  Q  LAL+ + +H 
Sbjct: 583 KLQNRAQVCK--DGIQECRY---LKSKISDQKGVPLDSTTLITASDRQEGLALITEKMHA 637

Query: 698 VSQHRKLV 721
           +   +K V
Sbjct: 638 LEMIKKKV 645


>01_05_0303 +
           20647654-20647830,20647981-20648067,20648549-20648719,
           20649377-20649430,20650614-20650994
          Length = 289

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 464 VKPPKGVGLFAPKP 423
           +KPPKGVGL AP P
Sbjct: 241 LKPPKGVGLIAPLP 254


>10_08_0793 -
           20614583-20614897,20615417-20615660,20617713-20617899,
           20618508-20618547,20618699-20618775,20618965-20619091
          Length = 329

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 515 IRMQDRPRICRLVQPPQHHRHSVHLPHKLLPQH-SVPVRI-QVLASG 649
           +R  +R ++ RL   P  H   VH  HKL  QH + P R+ Q++  G
Sbjct: 10  VRQYNRSKVPRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVG 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,385,828
Number of Sequences: 37544
Number of extensions: 365309
Number of successful extensions: 978
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)