Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_E01
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    32   0.48 
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AL032627-17|CAA21550.1|  103|Caenorhabditis elegans Hypothetical...    29   3.4  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical ...    29   5.9  
AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    29   5.9  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    28   7.8  

>U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical
           protein T13C2.7 protein.
          Length = 292

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 446 HPLEVSLHLLIRQLAVLLLGKQQIRMQDRPRICRLVQPPQHHRHSVHLPHKLLPQH-SVP 622
           HPLEV+L    +     L   + +  ++RP++C L+ PP   R SV   +  +P H SV 
Sbjct: 189 HPLEVNLPNRSKSHIGFL--PEIVVTEERPKLCLLLPPPNRRRKSVTTQNNTIPIHKSVS 246

Query: 623 VRIQVLASGS 652
            +  VL+  S
Sbjct: 247 CQQLVLSRKS 256


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 666 CR*CRLPEAKTCIRTGTECWGSSLCGRC-TECRWCCGGC 553
           C  CR P+   C R    C  +  C RC T CR CC GC
Sbjct: 85  CCCCR-PKCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGC 122


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 666 CR*CRLPEAKTCIRTGTECWGSSLCGRC-TECRWCCGGC 553
           C  CR P    C R    C  +  C RC T CR CC GC
Sbjct: 86  CCCCR-PRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGC 123


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 666 CR*CRLPEAKTCIRTGTECWGSSLCGRC-TECRWCCGGC 553
           C  CR P    C R    C  +  C RC T CR CC GC
Sbjct: 84  CCCCR-PRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGC 121


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 666 CR*CRLPEAKTCIRTGTECWGSSLCGRC-TECRWCCGGC 553
           C  CR P    C R    C  +  C RC T CR CC GC
Sbjct: 85  CCCCR-PRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGC 122


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 666 CR*CRLPEAKTCIRTGTECWGSSLCGRC-TECRWCCGGC 553
           C  CR P    C R    C  +  C RC T CR CC GC
Sbjct: 86  CCCCR-PRCCCCCRRCCTCCRTCCCTRCCTCCRPCCCGC 123


>AL032627-17|CAA21550.1|  103|Caenorhabditis elegans Hypothetical
           protein Y41C4A.13 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = -2

Query: 360 TKCKTAK---YWCTCCGTSEAECCF 295
           TKC T+    YW  CCG    ECCF
Sbjct: 47  TKCGTSSIFHYW-KCCGELNKECCF 70


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
 Frame = +2

Query: 476 IRQLAVLLLGKQQIRMQDRPRICRLVQP--PQHHRHSVHLPHKLLPQHSVPVRIQVLASG 649
           +R L  L L   Q   Q  P I  L+QP  PQ+   S+    ++LP+ S+P    +L   
Sbjct: 322 LRSLPALPLILLQPSRQALPLI--LLQPSLPQNQLRSLPAHPRILPRPSLPALPLILLQP 379

Query: 650 SRHQRQLALVFQHLHLVSQHRKLVLQRQ*YNRLXPTFGQTTAAPALGQSHL 802
           S  Q QL  +  H  ++ +    + Q+Q   R  P        P+L Q+ L
Sbjct: 380 SLPQNQLRSLLAHPLILPR----LSQQQNQLRSLPAHPPILLQPSLPQNQL 426


>AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical
           protein F32B5.7 protein.
          Length = 792

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/25 (44%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
 Frame = -2

Query: 621 GTECWGSSLCGRCTECRWC--CGGC 553
           G  C     CG C  C  C  CGGC
Sbjct: 761 GAACGACGACGACGACGGCGGCGGC 785


>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 639 KTCIRTGTECWGSSLCGRCTECRWCCGGC 553
           K C++        +   RC+ C  CC GC
Sbjct: 66  KVCVQDDCTTCSCTSASRCSRCSPCCSGC 94


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 348 TAKYWCTCCGTSEA-ECCFVFCIGSTK 271
           T  ++C CCG     +CC  FC G  K
Sbjct: 140 TGGFFCCCCGCMCCCQCCCNFCCGKYK 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,517,391
Number of Sequences: 27780
Number of extensions: 321241
Number of successful extensions: 937
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)