Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D24
         (826 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C6Y1 Cluster: SJCHGC06719 protein; n=1; Schistosoma j...    38   0.40 
UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome s...    33   8.7  
UniRef50_Q7XE25 Cluster: Heavy metal-associated domain containin...    33   8.7  

>UniRef50_Q5C6Y1 Cluster: SJCHGC06719 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC06719 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 121

 Score = 37.5 bits (83), Expect = 0.40
 Identities = 17/31 (54%), Positives = 18/31 (58%)
 Frame = +2

Query: 734 FFFXPPPXXXFFFFFXXPPPXFFFFXXPPPP 826
           FFF PP    F FFF  P   FFF+  PPPP
Sbjct: 34  FFFSPP----FVFFFSPPQWGFFFYTPPPPP 60


>UniRef50_Q4RSI9 Cluster: Chromosome 13 SCAF15000, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 13 SCAF15000, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 307

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 737 FFXPPPXXXFFFF-FXXPPPXFFFFXXPPPP 826
           +F P P   FF   F  PPP FFF   P PP
Sbjct: 233 YFSPLPLPPFFLLPFLFPPPPFFFPPKPNPP 263


>UniRef50_Q7XE25 Cluster: Heavy metal-associated domain containing
           protein, expressed; n=5; Oryza sativa|Rep: Heavy
           metal-associated domain containing protein, expressed -
           Oryza sativa subsp. japonica (Rice)
          Length = 359

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 822 GGGXXKKKKXGGGXXKKKKKXXXGGGXKK 736
           G G   KK  GGG  K KK+   GGG KK
Sbjct: 234 GAGGGDKKDGGGGDKKDKKEGGGGGGDKK 262


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,251,332
Number of Sequences: 1657284
Number of extensions: 9367928
Number of successful extensions: 13071
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11671
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)