Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D24
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0161 + 15312986-15313160,15313250-15313557,15313676-153137...    33   0.28 
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794...    30   2.6  
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680...    29   5.9  

>10_08_0161 +
           15312986-15313160,15313250-15313557,15313676-15313754,
           15313856-15314373
          Length = 359

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 822 GGGXXKKKKXGGGXXKKKKKXXXGGGXKK 736
           G G   KK  GGG  K KK+   GGG KK
Sbjct: 234 GAGGGDKKDGGGGDKKDKKEGGGGGGDKK 262



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 822 GGGXXKK--KKXGGGXXKKKKKXXXGGGXK 739
           GGG  KK  K+ GGG   KK +   GGG K
Sbjct: 120 GGGDDKKAEKEKGGGGGDKKAEKEKGGGDK 149


>11_02_0065 -
           7938007-7938393,7939292-7939435,7940597-7940665,
           7940762-7940809,7941488-7941584,7941688-7941767,
           7941841-7941912,7942256-7942350,7943903-7943984,
           7945176-7945209,7945255-7945262,7945657-7946058
          Length = 505

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 747 PPXXXXFFFFXXPPPPXFFFXXXPPP 824
           PP     F    PPPP  FF   PPP
Sbjct: 56  PPQVIRVFAAAPPPPPAAFFAAVPPP 81


>12_01_0752 -
           6798938-6799312,6799628-6799768,6800257-6800325,
           6800407-6800454,6801740-6801836,6801922-6802001,
           6802099-6802170,6802335-6802429,6802853-6802934,
           6805476-6805853
          Length = 478

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 746 PPPXXXFFFFFXXPPPXFFFFXXPPPP 826
           PPP      F   PPP    F  PPPP
Sbjct: 45  PPPPPVIRVFAAAPPPPRAAFFAPPPP 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031,680
Number of Sequences: 37544
Number of extensions: 344049
Number of successful extensions: 773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)