Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D23
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    58   9e-11
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   4.0  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   4.0  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   7.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   9.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   9.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   9.2  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 58.4 bits (135), Expect = 9e-11
 Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
 Frame = +2

Query: 176 CLKSSAQKAVPFLAAGIADLGIETMDPMTVGRVNTVQAG----LHMDFRDTTXXXXXXXX 343
           C+  + + AV  LA G+    I  ++P+ V  V   ++     L  ++++          
Sbjct: 43  CIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNL 102

Query: 344 XXXXXXX-YDKTLLDLKC---SVTLVGEYTLGGQLLILPIEGTGKYXXXXXXXXXXXXLD 511
                   +DK +L  +     V  V +Y + G++L+LP+ G GK             + 
Sbjct: 103 EIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIY 162

Query: 512 VEERIVEGDRYWHVSDWKHSAE-DVSKVEYQFQNLFNGNRDLAKTIHDFANSNWREIFQ 685
            E+    G+ Y  +   KH+ + + +KV+ +F+NLF+GN++L + ++ F N N   +F+
Sbjct: 163 CEKYEKNGETYLRIK--KHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFK 219


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -1

Query: 488 CPG---F*SCTFRCLRWVVSVVGHPTCI 414
           CP    F  C  RC R+  +VV  P CI
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCI 64


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -1

Query: 488 CPG---F*SCTFRCLRWVVSVVGHPTCI 414
           CP    F  C  RC R+  +VV  P CI
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCI 64


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 206 PFLAAGIADLGIETMDPMTVGR 271
           PFL++ ++ + +  + P T+GR
Sbjct: 4   PFLSSSVSTVIVTALTPSTLGR 25


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 436 TDTTHRRHRKVQDQNPGHHNED 501
           T   H+ H K + +N  H N+D
Sbjct: 50  TSQPHQDHNKEKSKNNHHCNQD 71


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 462 PVPSMGSISSWPPNVYSPTSV 400
           P+P+M ++S  PP    P S+
Sbjct: 419 PIPNMSNMSGMPPLPNMPGSM 439


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 246 VSIPRSAIPAARNGTAFCAEDFRQAVSFGRHGVINFAKSV 127
           ++ P +  P    G     +DF +  S    GV+ FAK +
Sbjct: 217 LACPLNPNPQPLTGQQELLQDFSKRFSPAIRGVVEFAKRI 256


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 418 HVGWPTTDTTHRRHRKVQDQNPGHHNED 501
           +V  PT     ++   V   +PG HN D
Sbjct: 105 NVAVPTKSILEKKPELVDATDPGEHNGD 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,198
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)