Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_D20
(1018 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.021
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.60
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 5.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 5.6
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 7.4
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 26 7.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 9.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 9.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.5 bits (83), Expect = 0.003
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -2
Query: 549 PPPPPPXKXGXPPPPPPP 496
PPPPPP G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -2
Query: 555 GXPPPPPP---XKXGXPPPPPPP 496
G PPPPPP G PPPPPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782
Score = 35.5 bits (78), Expect = 0.012
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2
Query: 546 PPPPPXKXGXPPPPPPP 496
PPP P G PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768
Score = 33.9 bits (74), Expect = 0.037
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 549 PPPPPPXKXGXPPPPPPP 496
P PPP G PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767
Score = 32.7 bits (71), Expect = 0.085
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -3
Query: 557 GGXPPPPPP---XKXGXPPPPLP 498
GG PPPPPP G PPPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 547 PPPPPXKXGXPPPPPSP 497
PPPPP P P P+P
Sbjct: 732 PPPPPPAVIVPTPAPAP 748
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 34.7 bits (76), Expect = 0.021
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -2
Query: 555 GXPPPPPPXKXGXPP--PPPPP 496
G PPPPPP PP PPPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPP 28
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = -3
Query: 557 GGXPPPPPP---XKXGXPPPPLP 498
G PPPPPP PPPP P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPP 29
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.60
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Frame = -2
Query: 549 PPPP--PPXKXGXPPPPPPP 496
PPPP PP G P PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -2
Query: 549 PPPPPPXKXGXPPPPPPP 496
P PPPP PPP PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPP 1722
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 499 GRGGGGXPXFXGGGGGGXPP 558
G GGG F GGG GG PP
Sbjct: 184 GHNGGGFGGF-GGGSGGPPP 202
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.8 bits (49), Expect(2) = 5.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 516 PPPPPPP 496
PPPPPPP
Sbjct: 1096 PPPPPPP 1102
Score = 21.0 bits (42), Expect(2) = 5.1
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2
Query: 549 PPPPPP 532
PPPPPP
Sbjct: 1095 PPPPPP 1100
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 549 PPPPPPXKXGXPPPPPP 499
PPPP K G PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPP 224
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 557 GGXPPPPPPXKXGXPPP 507
GG PPPPPP PPP
Sbjct: 303 GGLPPPPPP-----PPP 314
Score = 25.8 bits (54), Expect = 9.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 522 GXPPPPPPP 496
G PPPPPPP
Sbjct: 304 GLPPPPPPP 312
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 546 PPPPPXKXGXPPPPPPP 496
PPPP PP PPP
Sbjct: 48 PPPPSVDHSAPPSGPPP 64
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 7.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 543 PPPPXKXGXPPPPPP 499
P PP PPPPPP
Sbjct: 352 PLPPQGRSAPPPPPP 366
Score = 25.8 bits (54), Expect = 9.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 548 PPPPPPXKXGXPPPPL 501
PPPPPP + PP+
Sbjct: 312 PPPPPPSRRNRGKPPI 327
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Frame = -3
Query: 548 PPPPPPXKX---GXPPPPL 501
PPPPPP G PPPL
Sbjct: 361 PPPPPPRSAPSTGRQPPPL 379
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 540 PPPXKXGXPPPPPPP 496
P P G PPPPPP
Sbjct: 347 PTPQVQGSRPPPPPP 361
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 546 PPPPPXKXGXPPPPPP 499
PP P G PP PPP
Sbjct: 1198 PPVPKPSVGVPPVPPP 1213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,805
Number of Sequences: 5004
Number of extensions: 33990
Number of successful extensions: 588
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -