Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP03_F_D18
(840 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.77
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.77
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.77
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 30 1.8
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 30 1.8
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.4
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 28 7.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 561 PPGXXXXXGGGXXPPPPFXXXXXXGGPP 478
PPG GG PPPP GGPP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPP 743
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 696 PPPXXXXKKKXXGGXFFFPPXGGXKKXPPPPPXG 797
PPP G PP GG PPPPP G
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 750 PPXGGXKKXPPPPP 791
PP GG K PPPPP
Sbjct: 775 PPPGGFKGGPPPPP 788
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 561 PPGXXXXXGGGXXPPPPFXXXXXXGGPP 478
P G GG PPPP GGPP
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPP 759
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 561 PPGXXXXXGGGXXPPPPFXXXXXXGGPP 478
PPG GG PPPP GGPP
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPP 743
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 696 PPPXXXXKKKXXGGXFFFPPXGGXKKXPPPPPXG 797
PPP G PP GG PPPPP G
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 750 PPXGGXKKXPPPPP 791
PP GG K PPPPP
Sbjct: 775 PPPGGFKGGPPPPP 788
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 561 PPGXXXXXGGGXXPPPPFXXXXXXGGPP 478
P G GG PPPP GGPP
Sbjct: 732 PGGLPPITGGPPPPPPPGGLPPISGGPP 759
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 561 PPGXXXXXGGGXXPPPPFXXXXXXGGPP 478
PPG GG PPPP GGPP
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPP 326
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +3
Query: 696 PPPXXXXKKKXXGGXFFFPPXGGXKKXPPPPPXG 797
PPP G PP GG PPPPP G
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 750 PPXGGXKKXPPPPP 791
PP GG K PPPPP
Sbjct: 358 PPPGGFKGGPPPPP 371
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 561 PPGXXXXXGGGXXPPPPFXXXXXXGGPP 478
P G GG PPPP GGPP
Sbjct: 315 PGGLPPITGGPPPPPPPGGLPPISGGPP 342
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 537 GGGXXPPPPFXXXXXXGGPPKXIXGXXFKNXGGXP 433
GGG PPPP GGPP G + GG P
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPP--PGQPYGPPGGYP 707
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 537 GGGXXPPPPFXXXXXXGGPPKXIXGXXFKNXGGXP 433
GGG PPPP GGPP G + GG P
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPP--PGQPYGPPGGYP 707
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 561 PPGXXXXXGGGXXPPPPFXXXXXXGGPP 478
PP GG PPPP GGPP
Sbjct: 784 PPSFRGGRGGHGGPPPPHFDRRGGGGPP 811
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 742 FFSPRGGXKKXXPPPPPXGXXXFXXGGGXFXPP 840
F S GG PPPPP GGG PP
Sbjct: 19 FPSGGGGGCGCAPPPPPPACGCGGGGGGYAAPP 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,661,832
Number of Sequences: 27780
Number of extensions: 295163
Number of successful extensions: 1042
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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