Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D15
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    35   0.014
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   0.93 

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 26/79 (32%), Positives = 26/79 (32%)
 Frame = +3

Query: 444 GGXXGGXGXXFXGPPPXPXAXGPGXGGXGXXXXXXXXXXXXDXXXXPGGXPXRQXXXXXG 623
           GG  GG G    GPPP P   G G GG G                  GG P        G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFG-GFGGFGGEGHHHGGHGGF------GGGPGGFEGGPGG 239

Query: 624 XXXGXGPXXGGXFXFGFSP 680
              G G   GG   FG  P
Sbjct: 240 FGGGPGGFGGGLGGFGGGP 258



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = +2

Query: 395 GGGXGGFFGXFXXGXXGGXXXGXWGXFXGXPPXXXGPGXGGXG 523
           GGG GGF G       G    G +G F G      G G  G G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/42 (40%), Positives = 17/42 (40%)
 Frame = +2

Query: 398 GGXGGFFGXFXXGXXGGXXXGXWGXFXGXPPXXXGPGXGGXG 523
           GG GGF G        G   G  G F G  P   G G GG G
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGG-PGGFGGGPGGFG 248



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/37 (45%), Positives = 17/37 (45%)
 Frame = +2

Query: 398 GGXGGFFGXFXXGXXGGXXXGXWGXFXGXPPXXXGPG 508
           GG GG  G F  G  GG   G  G F G P    GPG
Sbjct: 238 GGFGGGPGGFGGGL-GGFGGGP-GGFGGGPGGHGGPG 272



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
 Frame = +2

Query: 380 FGXLXGGGXG-----GFFGXFXXGXXGGXXXGXWGXFXGXPPXXXG-PGXGGXG 523
           FG   GG  G     G FG F      G   G  G F G P    G PG  G G
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +2

Query: 383 GXLXGGGXGGFFGXFXXGXXGGXXXGXWGXFXG 481
           G   GG  GGF G    G  GG   G  G F G
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,064
Number of Sequences: 5004
Number of extensions: 17329
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)