Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D14
         (935 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    52   2e-05
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    52   2e-05
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    51   4e-05
UniRef50_UPI00005BFE3C Cluster: PREDICTED: hypothetical protein;...    36   1.5  
UniRef50_Q59FI9 Cluster: Ribosomal protein L12 variant; n=56; Fu...    36   1.5  
UniRef50_P30050 Cluster: 60S ribosomal protein L12; n=158; Eukar...    36   1.5  
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    35   2.6  
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    35   2.6  
UniRef50_UPI0000D9D615 Cluster: PREDICTED: similar to 60S riboso...    34   6.0  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 52.4 bits (120), Expect = 2e-05
 Identities = 22/29 (75%), Positives = 25/29 (86%)
 Frame = +2

Query: 479 VCVXGALPLPRSLTRCARSFGCGERYQLT 565
           +C  G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 52.4 bits (120), Expect = 2e-05
 Identities = 33/59 (55%), Positives = 36/59 (61%)
 Frame = -2

Query: 706 LVQGGGAYGKRQQRGLFTVXGLLLAFCSHVXSCVIPLILWITVLPPLSELIPLAAAERP 530
           LV+G     KR +  L  V   LL  CS     + PLILWITVLPPLSEL PLAA ERP
Sbjct: 2   LVRGAEPMEKRLRCWLLPVLCFLLT-CSFR---LYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 51.2 bits (117), Expect = 4e-05
 Identities = 29/54 (53%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 443 CINESANARGXAVCVXGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQG 601
           CI + A AR  AV V  ALPL RS TRC RS GCG      +  R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319


>UniRef50_UPI00005BFE3C Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 255

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +2

Query: 68  VEGRPPHDLIDDINSGAL 121
           V+GR PHD+IDDINSGA+
Sbjct: 233 VDGRHPHDIIDDINSGAV 250


>UniRef50_Q59FI9 Cluster: Ribosomal protein L12 variant; n=56;
           Fungi/Metazoa group|Rep: Ribosomal protein L12 variant -
           Homo sapiens (Human)
          Length = 197

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +2

Query: 68  VEGRPPHDLIDDINSGAL 121
           V+GR PHD+IDDINSGA+
Sbjct: 175 VDGRHPHDIIDDINSGAV 192


>UniRef50_P30050 Cluster: 60S ribosomal protein L12; n=158;
           Eukaryota|Rep: 60S ribosomal protein L12 - Homo sapiens
           (Human)
          Length = 165

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +2

Query: 68  VEGRPPHDLIDDINSGAL 121
           V+GR PHD+IDDINSGA+
Sbjct: 143 VDGRHPHDIIDDINSGAV 160


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 15/19 (78%), Positives = 15/19 (78%)
 Frame = +3

Query: 246 DPDMIXYIDXXGQTTTXMQ 302
           DPDMI YID  GQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 35.1 bits (77), Expect = 2.6
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = -3

Query: 513 ERGSGRAPXTQTAXPRALADSLMQ 442
           +R +  AP TQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_UPI0000D9D615 Cluster: PREDICTED: similar to 60S ribosomal
           protein L12; n=1; Macaca mulatta|Rep: PREDICTED: similar
           to 60S ribosomal protein L12 - Macaca mulatta
          Length = 268

 Score = 33.9 bits (74), Expect = 6.0
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 29  RESLRFYSQLDVLVEGRPPHDLIDDINSGAL 121
           +E L     L   V+GR PH +IDDINSGA+
Sbjct: 233 KELLGTAQSLGCNVDGRHPHKIIDDINSGAV 263


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,885,285
Number of Sequences: 1657284
Number of extensions: 8393522
Number of successful extensions: 17307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17303
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 85732778670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)