Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D14
         (935 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0009 + 22134160-22134696                                         29   5.3  
06_03_0135 + 17049018-17049472,17049591-17049677,17049783-170498...    28   9.3  

>04_04_0009 + 22134160-22134696
          Length = 178

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 697 GGGAYGKRQQRGLFTVXGLLLAFCSHVXSCVIPLILWITVLPP-LSELIPLA 545
           GGG +GK      F+V  LLL  C      ++PL+L     PP +  L+P+A
Sbjct: 92  GGGVWGK-----YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVA 138


>06_03_0135 +
           17049018-17049472,17049591-17049677,17049783-17049839,
           17049953-17050191,17050753-17050871,17051002-17051088,
           17051198-17051257
          Length = 367

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -3

Query: 759 IGTVFLRFPTXTERRFLSSSRGAEPMENASNAAFLRXLAFCWPFAH 622
           I  +F   P     RFL +     P+  A+ AA L  L  CW   H
Sbjct: 43  IPALFAYGPLQCHVRFLQTQNMVVPVMAAAGAAALCHLGVCWALVH 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,865,495
Number of Sequences: 37544
Number of extensions: 248343
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)