Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_D11
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...   212   5e-56
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    30   0.40 
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   6.5  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   8.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   8.6  

>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score =  212 bits (518), Expect = 5e-56
 Identities = 95/191 (49%), Positives = 140/191 (73%), Gaps = 4/191 (2%)
 Frame = +3

Query: 201 FHE-ISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEYPMIFKLTN 377
           FH  +++ F+  YRCY V+M+PG ER +V  GGK+I+PPSALE+L+RLN+ YPM+F   N
Sbjct: 24  FHNNVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFEN 83

Query: 378 KKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVSLPVATFSKFQPLSED 557
           + +++ TH GVLEF+A+EGRVYLP+WMM  L LE G L+++ +  +   ++ K QP S +
Sbjct: 84  EAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVN 143

Query: 558 FLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKPGNA---VIIIECDMN 728
           FLDIT+ +AVLEN LRNFS LT  D+  I YN +VY++ V++ +P ++   V ++E D+ 
Sbjct: 144 FLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLV 203

Query: 729 VEFAPPVGYKE 761
           V+F PP+GY+E
Sbjct: 204 VDFDPPIGYEE 214


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 628 PVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSICIKAPSSRTRF 464
           P + ++ L  +FS+  F F+ +K + +  +N+      SD   + IK P++ T F
Sbjct: 177 PTLLYKSLSNEFSSLPFSFMPAKANVNDLFNISAYVDTSDLPILFIKHPNNGTSF 231


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 376 FVNLNIIGYSILSLVSCSNADGGIIIL 296
           F + N++G S   L+SCS+ +G I IL
Sbjct: 203 FSSWNVVGDSATCLLSCSSRNGEIRIL 229


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 47  WIFAC*VKTSVLNFCTLCMN 106
           W+F C + +SV  F TL +N
Sbjct: 265 WVFMCALNSSVAGFSTLAVN 284


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 522 ATFSKFQPLSEDFLDITNPKAVL 590
           A  SK  P SEDF+DIT P  +L
Sbjct: 491 ANSSKPIPDSEDFMDITRPFNIL 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,585,441
Number of Sequences: 5004
Number of extensions: 74249
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)